Variant report

Variant	rs58341586
Chromosome Location	chr3:89295355-89295356
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55781119	0.98[AFR][1000 genomes]
rs56741762	1.00[AMR][1000 genomes]
rs60893359	1.00[AMR][1000 genomes]
rs61152940	1.00[AMR][1000 genomes]
rs73845992	1.00[AMR][1000 genomes]
rs73845993	1.00[AMR][1000 genomes]
rs73845994	1.00[AMR][1000 genomes]
rs73845998	1.00[AMR][1000 genomes]
rs73846114	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73846115	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849211	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849212	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849213	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849215	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849219	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849227	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590921	chr3:89294149-89392778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89293800-89296400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:89293800-89297400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:89294000-89296200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:89294000-89296200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:89294000-89296400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:89294000-89296800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:89294200-89296800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:89294600-89296200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:89294800-89295400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:89295000-89296200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr3:89295200-89295400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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