Variant report

Variant	rs73845993
Chromosome Location	chr3:89211753-89211754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56741762	1.00[AMR][1000 genomes]
rs58341586	1.00[AMR][1000 genomes]
rs60893359	1.00[AMR][1000 genomes]
rs61152940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845992	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845998	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73846114	1.00[AMR][1000 genomes]
rs73846115	1.00[AMR][1000 genomes]
rs73849211	1.00[AMR][1000 genomes]
rs73849212	1.00[AMR][1000 genomes]
rs73849213	1.00[AMR][1000 genomes]
rs73849215	1.00[AMR][1000 genomes]
rs73849217	1.00[AMR][1000 genomes]
rs73849219	1.00[AMR][1000 genomes]
rs73849227	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005603	chr3:89174152-89223459	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1008916	chr3:89206065-89241915	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89206000-89211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:89210400-89212200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:89211400-89212200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:89211600-89211800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:89211600-89211800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:89211600-89211800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:89211600-89212000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:89211600-89212200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:89211600-89212200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:89211600-89217400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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