Variant report

Variant	rs73849227
Chromosome Location	chr3:89322456-89322457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55781119	0.93[AFR][1000 genomes]
rs56741762	1.00[AMR][1000 genomes]
rs58341586	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60893359	1.00[AMR][1000 genomes]
rs61152940	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845992	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845993	1.00[AMR][1000 genomes]
rs73845994	1.00[AMR][1000 genomes]
rs73845998	1.00[AMR][1000 genomes]
rs73846114	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73846115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849212	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849213	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849217	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849219	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590921	chr3:89294149-89392778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590922	chr3:89314862-89417064	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89317800-89325400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:89321800-89322600	Enhancers	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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