Variant report
| Variant | rs58370530 |
|---|---|
| Chromosome Location | chr1:59020205-59020206 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000270209 | TF binding region |
| ENSG00000173406 | Chromatin interaction |
| ENSG00000162600 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1062964 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs14008 | 0.80[EUR][1000 genomes] |
| rs2268943 | 0.83[EUR][1000 genomes] |
| rs55731318 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56065191 | 0.86[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56381640 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6671358 | 0.83[AMR][1000 genomes] |
| rs6674248 | 0.83[AMR][1000 genomes] |
| rs6683669 | 0.83[EUR][1000 genomes] |
| rs72669891 | 0.83[AMR][1000 genomes] |
| rs72672226 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72672238 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72672239 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72672249 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72672271 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72672286 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72672292 | 0.83[EUR][1000 genomes] |
| rs72674118 | 1.00[EUR][1000 genomes] |
| rs72674121 | 1.00[EUR][1000 genomes] |
| rs72674127 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003930 | chr1:58930444-59157038 | Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
