Variant report
| Variant | rs72672271 |
|---|---|
| Chromosome Location | chr1:59024526-59024527 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:59010806..59014775-chr1:59020178..59025032,4 | MCF-7 | breast: | |
| 2 | chr1:59005153..59007258-chr1:59023962..59025940,2 | K562 | blood: | |
| 3 | chr1:59023125..59024763-chr1:59041527..59043694,2 | MCF-7 | breast: | |
| 4 | chr1:59010754..59013570-chr1:59022178..59025066,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000173406 | Chromatin interaction |
| ENSG00000162600 | Chromatin interaction |
| ENSG00000184292 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1062964 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs14008 | 0.80[EUR][1000 genomes] |
| rs2268943 | 0.83[EUR][1000 genomes] |
| rs55731318 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56065191 | 0.86[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56381640 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs58370530 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6671358 | 0.83[AMR][1000 genomes] |
| rs6674248 | 0.83[AMR][1000 genomes] |
| rs6683669 | 0.83[EUR][1000 genomes] |
| rs72669891 | 0.83[AMR][1000 genomes] |
| rs72672226 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72672238 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72672239 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72672249 | 0.95[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72672286 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72672292 | 0.83[EUR][1000 genomes] |
| rs72674118 | 1.00[EUR][1000 genomes] |
| rs72674121 | 1.00[EUR][1000 genomes] |
| rs72674127 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003930 | chr1:58930444-59157038 | Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
