Variant report

Variant	rs58400222
Chromosome Location	chr9:103129905-103129906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10989031	1.00[AMR][1000 genomes]
rs28460607	1.00[AMR][1000 genomes]
rs60431094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60958178	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61603896	1.00[AMR][1000 genomes]
rs6479012	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7045931	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655141	0.84[AFR][1000 genomes]
rs73658711	0.84[AFR][1000 genomes]
rs73658713	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658715	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658716	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103116600-103131000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:103125200-103135400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:103129600-103131800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:103129800-103131800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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