Variant report

Variant	rs73658711
Chromosome Location	chr9:103047379-103047380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103037852..103042243-chr9:103042555..103047658,4	K562	blood:
2	chr9:103039312..103042243-chr9:103045251..103047658,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs58400222	0.84[AFR][1000 genomes]
rs59730136	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60431094	0.84[AFR][1000 genomes]
rs60958178	1.00[AFR][1000 genomes]
rs6479012	1.00[AFR][1000 genomes]
rs7034717	1.00[AMR][1000 genomes]
rs7045931	1.00[AFR][1000 genomes]
rs73655139	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655140	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658713	1.00[AFR][1000 genomes]
rs73658714	0.92[AFR][1000 genomes]
rs73658715	0.92[AFR][1000 genomes]
rs73658716	0.92[AFR][1000 genomes]
rs73658717	0.84[AFR][1000 genomes]
rs7867381	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102973000-103053800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:102974000-103047600	Weak transcription	Fetal Brain Male	brain
3	chr9:102976800-103047800	Weak transcription	Fetal Heart	heart
4	chr9:102979400-103054600	Weak transcription	NHEK	skin
5	chr9:102987400-103054600	Weak transcription	Gastric	stomach
6	chr9:102997800-103054400	Weak transcription	Colonic Mucosa	Colon
7	chr9:103009400-103047600	Weak transcription	HUVEC	blood vessel
8	chr9:103013000-103047400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr9:103022000-103047800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:103026200-103047600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:103029000-103053600	Weak transcription	Hela-S3	cervix
12	chr9:103029200-103047600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:103029200-103054600	Weak transcription	Brain Angular Gyrus	brain
14	chr9:103029800-103047400	Weak transcription	HepG2	liver
15	chr9:103034800-103047400	Strong transcription	Primary T cells from cord blood	blood
16	chr9:103039000-103047400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr9:103039400-103047800	Weak transcription	HSMMtube	muscle
18	chr9:103040200-103047600	Weak transcription	HSMM	muscle
19	chr9:103040400-103053000	Weak transcription	NHLF	lung
20	chr9:103040400-103058600	Weak transcription	NH-A	brain
21	chr9:103040800-103047800	Weak transcription	NHDF-Ad	bronchial
22	chr9:103041400-103047600	Strong transcription	Liver	Liver
23	chr9:103042400-103047400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:103044000-103067800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:103044200-103048200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:103044200-103048800	Strong transcription	Left Ventricle	heart
27	chr9:103044200-103071200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:103044600-103102400	Weak transcription	Stomach Mucosa	stomach
29	chr9:103044800-103049600	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr9:103044800-103067800	Strong transcription	Stomach Smooth Muscle	stomach
31	chr9:103045200-103047600	Weak transcription	K562	blood
32	chr9:103045200-103053000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:103045800-103047600	Strong transcription	Duodenum Mucosa	Duodenum
34	chr9:103045800-103047800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr9:103045800-103047800	Strong transcription	Ovary	ovary
36	chr9:103045800-103050800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:103045800-103051200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
38	chr9:103045800-103051200	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr9:103045800-103052000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:103045800-103052000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:103045800-103052200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:103046000-103047800	Strong transcription	Adipose Nuclei	Adipose
43	chr9:103046000-103048400	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr9:103046000-103051200	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr9:103046000-103051600	Strong transcription	Placenta	Placenta
46	chr9:103046000-103052000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:103046000-103052400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:103046000-103075400	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr9:103046200-103047400	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr9:103046200-103048200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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