Variant report

Variant	rs6479012
Chromosome Location	chr9:103088774-103088775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103087811..103094429-chr9:103096062..103101866,9	K562	blood:
2	chr9:103087213..103089016-chr9:103234506..103236469,2	K562	blood:
3	chr9:103087241..103090159-chr9:103090884..103093840,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241697	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10989031	1.00[AMR][1000 genomes]
rs1338122	1.00[ASW][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap]
rs28460607	1.00[AMR][1000 genomes]
rs58400222	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59730136	0.80[AFR][1000 genomes]
rs60431094	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60958178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61603896	1.00[AMR][1000 genomes]
rs7045931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655139	0.80[AFR][1000 genomes]
rs73655140	0.88[AFR][1000 genomes]
rs73655141	1.00[AFR][1000 genomes]
rs73658711	1.00[AFR][1000 genomes]
rs73658713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658715	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658716	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658717	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7867381	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103044600-103102400	Weak transcription	Stomach Mucosa	stomach
2	chr9:103046400-103104000	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:103046600-103092400	Strong transcription	Fetal Thymus	thymus
4	chr9:103051000-103088800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:103057600-103112600	Weak transcription	Fetal Brain Male	brain
6	chr9:103058400-103092200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:103063800-103093400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:103063800-103106000	Weak transcription	Esophagus	oesophagus
9	chr9:103064000-103100000	Weak transcription	Colonic Mucosa	Colon
10	chr9:103064200-103093200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:103064800-103104200	Weak transcription	Right Ventricle	heart
12	chr9:103065000-103114200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:103066200-103100400	Weak transcription	Aorta	Aorta
14	chr9:103066200-103112600	Weak transcription	Pancreas	Pancrea
15	chr9:103066200-103113200	Weak transcription	Spleen	Spleen
16	chr9:103066200-103113800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr9:103066800-103091600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:103067600-103112400	Weak transcription	Small Intestine	intestine
19	chr9:103068200-103094000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:103069200-103095400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:103069400-103094800	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:103069800-103092000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:103070000-103093800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr9:103072200-103113800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:103072600-103091800	Weak transcription	Brain Hippocampus Middle	brain
26	chr9:103074000-103113200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:103076600-103097000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:103078400-103100200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr9:103078400-103111200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr9:103078400-103112200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:103078600-103109000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr9:103079000-103093000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:103079000-103103600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr9:103079200-103097000	Weak transcription	Thymus	Thymus
35	chr9:103079800-103107600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:103080000-103108400	Weak transcription	HSMMtube	muscle
37	chr9:103080600-103090800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr9:103080800-103092400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:103080800-103100400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:103081000-103091000	Weak transcription	Colon Smooth Muscle	Colon
41	chr9:103081000-103104200	Weak transcription	Fetal Heart	heart
42	chr9:103081200-103100200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:103081200-103104600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr9:103081200-103107600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:103081400-103090000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr9:103082200-103099800	Weak transcription	Fetal Stomach	stomach
47	chr9:103082400-103089400	Strong transcription	K562	blood
48	chr9:103082800-103100200	Weak transcription	NHEK	skin
49	chr9:103082800-103111800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr9:103083400-103093800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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