Variant report

Variant	rs73655140
Chromosome Location	chr9:103003076-103003077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1338122	0.88[AFR][1000 genomes]
rs57518655	0.81[AFR][1000 genomes]
rs59730136	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60958178	0.88[AFR][1000 genomes]
rs61636243	0.81[AFR][1000 genomes]
rs6479012	0.88[AFR][1000 genomes]
rs7034717	1.00[AMR][1000 genomes]
rs7045931	0.88[AFR][1000 genomes]
rs73655135	0.88[AFR][1000 genomes]
rs73655139	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655141	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656949	0.81[AFR][1000 genomes]
rs73656950	0.81[AFR][1000 genomes]
rs73656951	0.81[AFR][1000 genomes]
rs73656954	0.81[AFR][1000 genomes]
rs73656955	0.81[AFR][1000 genomes]
rs73656957	0.88[AFR][1000 genomes]
rs73658711	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658713	0.88[AFR][1000 genomes]
rs73658714	0.80[AFR][1000 genomes]
rs73658715	0.80[AFR][1000 genomes]
rs73658716	0.80[AFR][1000 genomes]
rs7847283	0.81[AFR][1000 genomes]
rs7867381	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102958800-103014400	Weak transcription	Hela-S3	cervix
2	chr9:102972400-103017200	Weak transcription	Spleen	Spleen
3	chr9:102972400-103035200	Weak transcription	Esophagus	oesophagus
4	chr9:102972600-103027200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:102972600-103046600	Weak transcription	Psoas Muscle	Psoas
6	chr9:102973000-103008000	Weak transcription	HUVEC	blood vessel
7	chr9:102973000-103014600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:102973000-103027400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:102973000-103053800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:102974000-103014000	Weak transcription	Brain Substantia Nigra	brain
11	chr9:102974000-103014600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:102974000-103047600	Weak transcription	Fetal Brain Male	brain
13	chr9:102974200-103014600	Weak transcription	Brain Angular Gyrus	brain
14	chr9:102975800-103045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:102976600-103006400	Weak transcription	NHLF	lung
16	chr9:102976800-103047800	Weak transcription	Fetal Heart	heart
17	chr9:102977000-103014600	Weak transcription	NH-A	brain
18	chr9:102978400-103013000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:102979400-103054600	Weak transcription	NHEK	skin
20	chr9:102979600-103005200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:102984000-103005200	Weak transcription	HSMM	muscle
22	chr9:102984000-103014600	Weak transcription	HSMMtube	muscle
23	chr9:102985800-103014400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr9:102986600-103018800	Weak transcription	Small Intestine	intestine
25	chr9:102987400-103014600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr9:102987400-103045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr9:102987400-103054600	Weak transcription	Gastric	stomach
28	chr9:102987600-103007000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr9:102988800-103003800	Weak transcription	HepG2	liver
30	chr9:102989400-103005800	Weak transcription	Left Ventricle	heart
31	chr9:102989400-103014600	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:102989400-103047200	Weak transcription	GM12878-XiMat	blood
33	chr9:102989600-103011400	Weak transcription	Fetal Kidney	kidney
34	chr9:102989600-103014400	Weak transcription	Osteobl	bone
35	chr9:102989600-103027600	Weak transcription	A549	lung
36	chr9:102989800-103004000	Weak transcription	Fetal Intestine Large	intestine
37	chr9:102989800-103008600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:102989800-103009200	Weak transcription	Colon Smooth Muscle	Colon
39	chr9:102989800-103014600	Weak transcription	Placenta	Placenta
40	chr9:102990200-103003800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr9:102990200-103003800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr9:102990200-103003800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr9:102990200-103004000	Weak transcription	Dnd41	blood
44	chr9:102990200-103005200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:102990200-103005400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:102990200-103007000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:102990200-103014600	Weak transcription	Brain Anterior Caudate	brain
48	chr9:102991000-103016600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:102991400-103014400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr9:102992200-103005200	Weak transcription	Duodenum Mucosa	Duodenum

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