Variant report

Variant	rs7867381
Chromosome Location	chr9:102978734-102978735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:102789117..102789782-chr9:102978268..102978906,2	MCF-7	breast:
2	chr9:102899936..102901498-chr9:102977241..102979211,2	MCF-7	breast:
3	chr9:102860126..102862049-chr9:102977512..102980181,2	MCF-7	breast:
4	chr9:102898839..102899539-chr9:102977752..102979100,4	MCF-7	breast:
5	chr9:102790104..102791073-chr9:102977999..102979056,8	MCF-7	breast:
6	chr9:102977350..102979200-chr9:102982388..102983975,2	MCF-7	breast:
7	chr9:102790163..102791038-chr9:102978082..102979151,4	MCF-7	breast:
8	chr9:102898852..102899861-chr9:102978063..102979186,4	MCF-7	breast:
9	chr9:102978273..102980168-chr9:102986592..102988351,2	K562	blood:
10	chr9:102790085..102791080-chr9:102977840..102979106,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000119509	Chromatin interaction
ENSG00000023318	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1338122	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529194	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs16918894	1.00[AMR][1000 genomes]
rs55773628	1.00[AMR][1000 genomes]
rs55813162	1.00[AMR][1000 genomes]
rs56265710	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57518655	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59679784	1.00[AMR][1000 genomes]
rs59700543	1.00[AMR][1000 genomes]
rs59730136	1.00[AFR][1000 genomes]
rs60045005	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60958178	0.80[AFR][1000 genomes]
rs61521457	1.00[AMR][1000 genomes]
rs61636243	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6479012	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs7045931	0.80[AFR][1000 genomes]
rs73655135	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655139	1.00[AFR][1000 genomes]
rs73655140	0.92[AFR][1000 genomes]
rs73655141	0.80[AFR][1000 genomes]
rs73656926	1.00[AMR][1000 genomes]
rs73656927	1.00[AMR][1000 genomes]
rs73656929	1.00[AMR][1000 genomes]
rs73656930	1.00[AMR][1000 genomes]
rs73656932	1.00[AMR][1000 genomes]
rs73656933	1.00[AMR][1000 genomes]
rs73656934	1.00[AMR][1000 genomes]
rs73656935	1.00[AMR][1000 genomes]
rs73656937	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656938	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656939	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656949	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656950	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656951	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656954	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656955	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656957	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658711	0.80[AFR][1000 genomes]
rs73658713	0.80[AFR][1000 genomes]
rs7847283	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7848856	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv2761274	chr9:102972481-102993911	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102955000-102988400	Weak transcription	Dnd41	blood
2	chr9:102955200-102999600	Weak transcription	Lung	lung
3	chr9:102956200-102983400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:102958800-103014400	Weak transcription	Hela-S3	cervix
5	chr9:102959000-102984400	Weak transcription	HepG2	liver
6	chr9:102959800-102994600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:102962000-102989200	Weak transcription	Fetal Lung	lung
8	chr9:102964800-102988400	Weak transcription	Fetal Intestine Large	intestine
9	chr9:102967600-102988600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:102972000-102988400	Weak transcription	Fetal Intestine Small	intestine
11	chr9:102972400-102988400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:102972400-102991400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:102972400-103017200	Weak transcription	Spleen	Spleen
14	chr9:102972400-103035200	Weak transcription	Esophagus	oesophagus
15	chr9:102972600-102978800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:102972600-102988000	Weak transcription	Liver	Liver
17	chr9:102972600-102988400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:102972600-102988600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:102972600-102998800	Weak transcription	Thymus	Thymus
20	chr9:102972600-103027200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:102972600-103046600	Weak transcription	Psoas Muscle	Psoas
22	chr9:102972800-102986600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr9:102972800-102987800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr9:102972800-102988400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr9:102972800-102989000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:102973000-102980800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:102973000-102988400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr9:102973000-102988400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr9:102973000-103008000	Weak transcription	HUVEC	blood vessel
30	chr9:102973000-103014600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:102973000-103027400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr9:102973000-103053800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr9:102973200-102991000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr9:102973800-102988600	Weak transcription	Brain Hippocampus Middle	brain
35	chr9:102973800-102991000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr9:102974000-102984600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:102974000-102988400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr9:102974000-102998600	Weak transcription	Fetal Brain Female	brain
39	chr9:102974000-103014000	Weak transcription	Brain Substantia Nigra	brain
40	chr9:102974000-103014600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:102974000-103047600	Weak transcription	Fetal Brain Male	brain
42	chr9:102974200-103014600	Weak transcription	Brain Angular Gyrus	brain
43	chr9:102974600-102989200	Weak transcription	Colon Smooth Muscle	Colon
44	chr9:102974600-102998600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr9:102975200-102985600	Weak transcription	Pancreas	Pancrea
46	chr9:102975800-102979400	Strong transcription	Fetal Muscle Leg	muscle
47	chr9:102975800-103045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr9:102976000-102980000	Strong transcription	Primary T cells from cord blood	blood
49	chr9:102976200-102998800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr9:102976600-103006400	Weak transcription	NHLF	lung

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