Variant report

Variant	rs61521457
Chromosome Location	chr9:102769002-102769003
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102767086..102769713-chr9:102770531..102773622,3	K562	blood:
2	chr9:102767086..102769925-chr9:102772122..102773628,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1338122	1.00[AMR][1000 genomes]
rs1529194	1.00[AMR][1000 genomes]
rs16918894	1.00[AMR][1000 genomes]
rs55773628	1.00[AMR][1000 genomes]
rs55813162	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56265710	1.00[AMR][1000 genomes]
rs57518655	1.00[AMR][1000 genomes]
rs59679784	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59700543	1.00[AMR][1000 genomes]
rs60045005	1.00[AMR][1000 genomes]
rs61636243	1.00[AMR][1000 genomes]
rs73655135	1.00[AMR][1000 genomes]
rs73656926	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656927	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656929	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656930	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656932	1.00[AMR][1000 genomes]
rs73656933	1.00[AMR][1000 genomes]
rs73656934	1.00[AMR][1000 genomes]
rs73656935	1.00[AMR][1000 genomes]
rs73656937	1.00[AMR][1000 genomes]
rs73656938	1.00[AMR][1000 genomes]
rs73656939	1.00[AMR][1000 genomes]
rs73656949	1.00[AMR][1000 genomes]
rs73656950	1.00[AMR][1000 genomes]
rs73656951	1.00[AMR][1000 genomes]
rs73656954	1.00[AMR][1000 genomes]
rs73656955	1.00[AMR][1000 genomes]
rs73656957	1.00[AMR][1000 genomes]
rs7847283	1.00[AMR][1000 genomes]
rs7848856	1.00[AMR][1000 genomes]
rs7867381	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102711400-102769200	Weak transcription	Osteobl	bone
2	chr9:102718000-102777600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:102729600-102826800	Weak transcription	HMEC	breast
4	chr9:102731000-102778200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr9:102752200-102771600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:102757400-102790600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:102759600-102777000	Weak transcription	HUVEC	blood vessel
8	chr9:102760800-102783400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:102761000-102778200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:102762000-102790000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:102763400-102770000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:102763400-102783400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:102763600-102769800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:102763800-102773000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr9:102764200-102773400	Weak transcription	Fetal Heart	heart
16	chr9:102764200-102783200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:102764600-102769600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:102764600-102770400	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:102764600-102770400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:102764800-102770200	Strong transcription	Liver	Liver
21	chr9:102765200-102777000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:102765600-102769600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:102765600-102770200	Strong transcription	Dnd41	blood
24	chr9:102766000-102769600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr9:102766000-102770200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:102766000-102773400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr9:102766200-102769600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr9:102766200-102770400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:102766200-102778200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:102766400-102770000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr9:102766400-102770000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:102766400-102770000	Strong transcription	Adipose Nuclei	Adipose
33	chr9:102766400-102770200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr9:102766400-102783400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:102766400-102784600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr9:102766400-102785400	Weak transcription	Fetal Brain Male	brain
37	chr9:102766400-102787000	Weak transcription	Colon Smooth Muscle	Colon
38	chr9:102766400-102794800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:102766600-102770200	Strong transcription	Placenta	Placenta
40	chr9:102766600-102770400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:102766600-102787200	Weak transcription	Psoas Muscle	Psoas
42	chr9:102766800-102769200	Weak transcription	Left Ventricle	heart
43	chr9:102766800-102769400	Strong transcription	Fetal Intestine Large	intestine
44	chr9:102766800-102770000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:102766800-102773800	Weak transcription	Fetal Kidney	kidney
46	chr9:102766800-102783400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr9:102766800-102784600	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr9:102766800-102793000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr9:102767000-102770200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:102767000-102773800	Weak transcription	NHLF	lung

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