Variant report

Variant	rs55773628
Chromosome Location	chr9:102825624-102825625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102807697..102809617-chr9:102824304..102827110,2	K562	blood:
2	chr9:102821199..102823384-chr9:102825604..102827589,3	K562	blood:
3	chr9:102824602..102826220-chr9:102859510..102862176,2	K562	blood:

Variant related genes	Relation type
ENSG00000119509	Chromatin interaction
ENSG00000023318	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1338122	1.00[AMR][1000 genomes]
rs1529194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16918894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55813162	1.00[AMR][1000 genomes]
rs56265710	1.00[AMR][1000 genomes]
rs57518655	1.00[AMR][1000 genomes]
rs59679784	1.00[AMR][1000 genomes]
rs59700543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60045005	1.00[AMR][1000 genomes]
rs61521457	1.00[AMR][1000 genomes]
rs61636243	1.00[AMR][1000 genomes]
rs73655135	1.00[AMR][1000 genomes]
rs73656926	1.00[AMR][1000 genomes]
rs73656927	1.00[AMR][1000 genomes]
rs73656929	1.00[AMR][1000 genomes]
rs73656930	1.00[AMR][1000 genomes]
rs73656932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656935	1.00[AMR][1000 genomes]
rs73656937	1.00[AMR][1000 genomes]
rs73656938	1.00[AMR][1000 genomes]
rs73656939	1.00[AMR][1000 genomes]
rs73656949	1.00[AMR][1000 genomes]
rs73656950	1.00[AMR][1000 genomes]
rs73656951	1.00[AMR][1000 genomes]
rs73656954	1.00[AMR][1000 genomes]
rs73656955	1.00[AMR][1000 genomes]
rs73656957	1.00[AMR][1000 genomes]
rs7847283	1.00[AMR][1000 genomes]
rs7848856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7867381	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102729600-102826800	Weak transcription	HMEC	breast
2	chr9:102767600-102826400	Weak transcription	Small Intestine	intestine
3	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:102767800-102830000	Weak transcription	HSMMtube	muscle
5	chr9:102767800-102835600	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:102796400-102826000	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:102796400-102828800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:102797400-102827800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:102800000-102828800	Weak transcription	Aorta	Aorta
10	chr9:102800000-102828800	Weak transcription	Gastric	stomach
11	chr9:102800000-102828800	Weak transcription	Pancreas	Pancrea
12	chr9:102800000-102828800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
14	chr9:102800200-102828800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:102800200-102836400	Weak transcription	Fetal Stomach	stomach
16	chr9:102802400-102829000	Weak transcription	Psoas Muscle	Psoas
17	chr9:102804000-102826000	Weak transcription	NHDF-Ad	bronchial
18	chr9:102805400-102844800	Weak transcription	Thymus	Thymus
19	chr9:102807400-102844800	Weak transcription	Fetal Brain Male	brain
20	chr9:102809600-102828600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:102809600-102828600	Weak transcription	Brain Substantia Nigra	brain
22	chr9:102809800-102845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr9:102810000-102839200	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:102810800-102845400	Weak transcription	Fetal Brain Female	brain
25	chr9:102812600-102826800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:102813800-102828400	Weak transcription	Brain Angular Gyrus	brain
27	chr9:102814000-102826800	Weak transcription	NHEK	skin
28	chr9:102814000-102828400	Weak transcription	Brain Anterior Caudate	brain
29	chr9:102814000-102829000	Weak transcription	Left Ventricle	heart
30	chr9:102814200-102829200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr9:102814200-102842400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:102814200-102842600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr9:102814600-102828600	Weak transcription	Adipose Nuclei	Adipose
34	chr9:102814600-102834200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:102818000-102842000	Weak transcription	Spleen	Spleen
36	chr9:102818400-102828800	Weak transcription	Right Ventricle	heart
37	chr9:102819400-102827600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:102819600-102826800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:102819800-102828200	Weak transcription	K562	blood
40	chr9:102819800-102829000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr9:102820200-102842800	Weak transcription	HepG2	liver
42	chr9:102820600-102826800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:102820600-102827000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:102820800-102837400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:102820800-102846000	Weak transcription	Primary T cells from cord blood	blood
46	chr9:102821000-102845600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr9:102821600-102826800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:102821800-102827600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:102821800-102837000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr9:102822000-102826800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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