Variant report

Variant	rs73656939
Chromosome Location	chr9:102869329-102869330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102860210..102863951-chr9:102865614..102871017,5	K562	blood:
2	chr9:102867138..102869775-chr9:102870214..102872272,2	MCF-7	breast:
3	chr9:102864005..102866769-chr9:102868987..102871467,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119509	Chromatin interaction
ENSG00000023318	Chromatin interaction
ENSG00000239908	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1338122	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529194	1.00[AMR][1000 genomes]
rs16918894	1.00[AMR][1000 genomes]
rs55773628	1.00[AMR][1000 genomes]
rs55813162	1.00[AMR][1000 genomes]
rs56265710	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57518655	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59679784	1.00[AMR][1000 genomes]
rs59700543	1.00[AMR][1000 genomes]
rs59730136	0.84[AFR][1000 genomes]
rs60045005	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61521457	1.00[AMR][1000 genomes]
rs61636243	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655135	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655139	0.84[AFR][1000 genomes]
rs73656926	1.00[AMR][1000 genomes]
rs73656927	1.00[AMR][1000 genomes]
rs73656929	1.00[AMR][1000 genomes]
rs73656930	1.00[AMR][1000 genomes]
rs73656932	1.00[AMR][1000 genomes]
rs73656933	1.00[AMR][1000 genomes]
rs73656934	1.00[AMR][1000 genomes]
rs73656935	1.00[AMR][1000 genomes]
rs73656937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656949	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656950	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656951	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656955	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656957	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847283	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7848856	1.00[AMR][1000 genomes]
rs7867381	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102862200-102876800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:102862200-102876800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:102862200-102879800	Weak transcription	Esophagus	oesophagus
4	chr9:102862200-102881000	Weak transcription	Gastric	stomach
5	chr9:102862200-102902400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:102862400-102870000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:102862400-102881400	Weak transcription	Colonic Mucosa	Colon
8	chr9:102862800-102870600	Weak transcription	Fetal Brain Female	brain
9	chr9:102862800-102872400	Weak transcription	Fetal Heart	heart
10	chr9:102862800-102873400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:102862800-102875400	Weak transcription	Small Intestine	intestine
12	chr9:102862800-102877600	Weak transcription	Stomach Mucosa	stomach
13	chr9:102862800-102881800	Weak transcription	Right Ventricle	heart
14	chr9:102862800-102887400	Weak transcription	Pancreas	Pancrea
15	chr9:102863400-102869800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:102863400-102871800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:102863400-102874200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:102863600-102869400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:102863600-102869600	Strong transcription	Fetal Muscle Leg	muscle
20	chr9:102863600-102870200	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr9:102863600-102871400	Strong transcription	Fetal Lung	lung
22	chr9:102863600-102872000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:102863800-102870000	Strong transcription	Fetal Muscle Trunk	muscle
24	chr9:102863800-102871800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:102864200-102869400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr9:102865600-102870400	Strong transcription	Liver	Liver
27	chr9:102865600-102871400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:102865800-102871800	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr9:102866000-102869400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:102866200-102869400	Strong transcription	Rectal Smooth Muscle	rectum
31	chr9:102866200-102869800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr9:102866200-102870000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr9:102866200-102870200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:102866200-102870400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr9:102866200-102870600	Strong transcription	Primary B cells from peripheral blood	blood
36	chr9:102866200-102870600	Strong transcription	Fetal Thymus	thymus
37	chr9:102866200-102871200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr9:102866200-102871200	Strong transcription	NHDF-Ad	bronchial
39	chr9:102866200-102872000	Strong transcription	HSMM	muscle
40	chr9:102866200-102874800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:102866400-102869400	Strong transcription	Brain Anterior Caudate	brain
42	chr9:102866400-102869600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr9:102866400-102869600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr9:102866400-102869600	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr9:102866400-102869600	Strong transcription	NHLF	lung
46	chr9:102866400-102869800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr9:102866400-102870000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:102866400-102870000	Strong transcription	Brain Angular Gyrus	brain
49	chr9:102866400-102870000	Strong transcription	Brain Cingulate Gyrus	brain
50	chr9:102866400-102870000	Strong transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links