Variant report

Variant	rs56265710
Chromosome Location	chr9:102915423-102915424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102909136..102911093-chr9:102914701..102916346,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1338122	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1529194	1.00[AMR][1000 genomes]
rs16918894	1.00[AMR][1000 genomes]
rs55773628	1.00[AMR][1000 genomes]
rs55813162	1.00[AMR][1000 genomes]
rs57518655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59679784	1.00[AMR][1000 genomes]
rs59700543	1.00[AMR][1000 genomes]
rs59730136	0.82[AFR][1000 genomes]
rs60045005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61521457	1.00[AMR][1000 genomes]
rs61636243	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655135	1.00[AMR][1000 genomes]
rs73655139	0.82[AFR][1000 genomes]
rs73656926	1.00[AMR][1000 genomes]
rs73656927	1.00[AMR][1000 genomes]
rs73656929	1.00[AMR][1000 genomes]
rs73656930	1.00[AMR][1000 genomes]
rs73656932	1.00[AMR][1000 genomes]
rs73656933	1.00[AMR][1000 genomes]
rs73656934	1.00[AMR][1000 genomes]
rs73656935	1.00[AMR][1000 genomes]
rs73656937	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656938	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656939	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656949	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656950	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656951	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656954	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656955	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656957	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847283	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7848856	1.00[AMR][1000 genomes]
rs7867381	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102874200-102937600	Weak transcription	Aorta	Aorta
2	chr9:102879800-102935000	Weak transcription	Ovary	ovary
3	chr9:102883000-102937600	Weak transcription	Fetal Intestine Large	intestine
4	chr9:102883800-102928400	Weak transcription	Primary T cells from cord blood	blood
5	chr9:102885200-102932600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:102886000-102931600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:102887800-102922200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:102889200-102936000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:102889600-102934600	Weak transcription	Fetal Intestine Small	intestine
10	chr9:102891800-102935200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:102893000-102934600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:102893800-102936200	Weak transcription	Primary B cells from cord blood	blood
13	chr9:102895200-102920600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:102911000-102918200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:102912400-102937800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr9:102912800-102918000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:102912800-102936200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:102913200-102915600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:102913200-102924600	Weak transcription	NHLF	lung
20	chr9:102913200-102935400	Weak transcription	Fetal Lung	lung
21	chr9:102913400-102930000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:102914400-102932000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:102914600-102940600	Weak transcription	HSMMtube	muscle
24	chr9:102915200-102934800	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:102915200-102935400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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