Variant report

Variant	rs58409454
Chromosome Location	chr8:49828789-49828790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49541767..49544762-chr8:49827612..49829547,2	MCF-7	breast:
2	chr8:49823570..49825612-chr8:49827229..49829086,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16939098	1.00[AMR][1000 genomes]
rs16939200	1.00[AMR][1000 genomes]
rs17364301	1.00[AMR][1000 genomes]
rs58547203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72640579	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49816200-49830400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:49817800-49832200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49820400-49829200	Weak transcription	NHDF-Ad	bronchial
4	chr8:49824000-49831000	Weak transcription	Fetal Brain Male	brain
5	chr8:49824400-49830800	Weak transcription	Adipose Nuclei	Adipose
6	chr8:49824600-49829600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:49825000-49828800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:49825000-49829600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:49825000-49831400	Weak transcription	Aorta	Aorta
10	chr8:49825200-49830600	Weak transcription	Fetal Stomach	stomach
11	chr8:49826400-49829200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:49827000-49830800	Weak transcription	HSMMtube	muscle
13	chr8:49827200-49829000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:49827400-49829800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:49827600-49828800	Enhancers	HSMM	muscle
16	chr8:49827600-49829400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:49827600-49830000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:49827800-49829400	Weak transcription	NHLF	lung
19	chr8:49827800-49829600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:49827800-49830000	Weak transcription	NH-A	brain
21	chr8:49827800-49830200	Weak transcription	Osteobl	bone
22	chr8:49827800-49830600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:49828000-49830000	Weak transcription	HMEC	breast
24	chr8:49828000-49830200	Weak transcription	Liver	Liver
25	chr8:49828000-49830800	Weak transcription	Hela-S3	cervix
26	chr8:49828200-49829000	Weak transcription	Fetal Kidney	kidney
27	chr8:49828200-49831200	Weak transcription	A549	lung
28	chr8:49828400-49829200	Weak transcription	Fetal Lung	lung
29	chr8:49828400-49830000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:49828600-49829000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr8:49828600-49831200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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