Variant report

Variant	rs58547203
Chromosome Location	chr8:49825161-49825162
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49823570..49825612-chr8:49827229..49829086,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16939098	1.00[AMR][1000 genomes]
rs16939200	1.00[AMR][1000 genomes]
rs17364301	1.00[AMR][1000 genomes]
rs58409454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72640579	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49816200-49830400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:49817800-49832200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:49820400-49829200	Weak transcription	NHDF-Ad	bronchial
4	chr8:49822200-49825400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:49823200-49825200	Enhancers	Fetal Stomach	stomach
6	chr8:49823200-49827400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:49823800-49825200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:49823800-49825200	Enhancers	Ovary	ovary
9	chr8:49824000-49825200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:49824000-49825200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:49824000-49831000	Weak transcription	Fetal Brain Male	brain
12	chr8:49824200-49825600	Enhancers	Fetal Kidney	kidney
13	chr8:49824400-49827400	Weak transcription	NH-A	brain
14	chr8:49824400-49830800	Weak transcription	Adipose Nuclei	Adipose
15	chr8:49824600-49825200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:49824600-49829600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:49824800-49825200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:49824800-49825200	Enhancers	Fetal Brain Female	brain
19	chr8:49824800-49825800	Enhancers	Fetal Lung	lung
20	chr8:49824800-49828200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:49825000-49827200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:49825000-49828800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:49825000-49829600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:49825000-49831400	Weak transcription	Aorta	Aorta

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