Variant report

Variant	rs58412081
Chromosome Location	chr11:33738120-33738121
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:33737945..33740866-chr11:33849483..33851287,2	MCF-7	breast:
2	chr11:33735999..33748184-chr11:33752891..33760863,45	MCF-7	breast:
3	chr11:33737769..33742301-chr11:33743570..33746479,4	K562	blood:
4	chr11:33738010..33741280-chr11:33742566..33747348,4	MCF-7	breast:
5	chr11:33736797..33739107-chr11:33760655..33763290,2	MCF-7	breast:
6	chr11:33724538..33726806-chr11:33736477..33738773,2	MCF-7	breast:
7	chr11:33737491..33739534-chr11:33756221..33758785,4	MCF-7	breast:
8	chr11:33737137..33739086-chr11:33763615..33764690,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57867058	1.00[AMR][1000 genomes]
rs58451441	1.00[AMR][1000 genomes]
rs61217095	1.00[AMR][1000 genomes]
rs61576899	1.00[AMR][1000 genomes]
rs73482997	1.00[AMR][1000 genomes]
rs73484914	1.00[AMR][1000 genomes]
rs73490854	1.00[AMR][1000 genomes]
rs73490869	1.00[AMR][1000 genomes]
rs73491051	1.00[AMR][1000 genomes]
rs73492932	1.00[AMR][1000 genomes]
rs73494779	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33723000-33746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:33723200-33744400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:33723200-33744400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:33723400-33741400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:33723400-33745000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:33723400-33745800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:33723400-33746000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:33723400-33753400	Weak transcription	Primary B cells from cord blood	blood
9	chr11:33726400-33739800	Strong transcription	Fetal Muscle Trunk	muscle
10	chr11:33726800-33741400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:33727000-33738200	Strong transcription	HSMM	muscle
12	chr11:33728200-33744000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:33728400-33744600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:33728600-33738200	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr11:33728600-33745000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:33729200-33740000	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:33729200-33742400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:33729200-33743200	Strong transcription	GM12878-XiMat	blood
19	chr11:33729800-33742400	Strong transcription	Osteobl	bone
20	chr11:33731000-33741400	Weak transcription	Fetal Brain Male	brain
21	chr11:33731800-33738200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:33731800-33738200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:33731800-33738400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:33731800-33738400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr11:33731800-33741200	Weak transcription	Ovary	ovary
26	chr11:33732000-33738200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:33732000-33738600	Weak transcription	Spleen	Spleen
28	chr11:33732000-33743000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:33732000-33745800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:33732000-33746000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:33733400-33739000	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:33733400-33744200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:33733800-33744200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:33733800-33744600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:33734000-33742000	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:33734200-33741400	Weak transcription	Fetal Kidney	kidney
37	chr11:33734400-33738200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:33734800-33744800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:33735200-33738200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:33735400-33743000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr11:33735600-33738400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:33735600-33742800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:33735800-33738200	Weak transcription	Brain Anterior Caudate	brain
44	chr11:33735800-33738200	Weak transcription	Esophagus	oesophagus
45	chr11:33735800-33738400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:33735800-33738400	Weak transcription	Psoas Muscle	Psoas
47	chr11:33735800-33741200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:33735800-33741200	Strong transcription	NH-A	brain
49	chr11:33735800-33743000	Strong transcription	Brain Cingulate Gyrus	brain
50	chr11:33735800-33743000	Weak transcription	Fetal Heart	heart

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