Variant report

Variant	rs58451441
Chromosome Location	chr11:33696488-33696489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57867058	1.00[AMR][1000 genomes]
rs58412081	1.00[AMR][1000 genomes]
rs61217095	1.00[AMR][1000 genomes]
rs61576899	1.00[AMR][1000 genomes]
rs73482997	1.00[AMR][1000 genomes]
rs73484914	1.00[AMR][1000 genomes]
rs73490854	1.00[AMR][1000 genomes]
rs73490869	1.00[AMR][1000 genomes]
rs73491051	1.00[AMR][1000 genomes]
rs73492932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33674800-33700000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:33685200-33697800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:33691000-33701600	Weak transcription	Gastric	stomach
4	chr11:33691000-33712400	Weak transcription	Psoas Muscle	Psoas
5	chr11:33691400-33696800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:33691800-33704200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:33693000-33697000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:33693000-33699600	Weak transcription	Brain Germinal Matrix	brain
9	chr11:33693000-33700000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:33693000-33703400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:33693800-33703800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:33694000-33713600	Weak transcription	Fetal Brain Female	brain
13	chr11:33694400-33704600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:33695000-33696600	Enhancers	HSMMtube	muscle
15	chr11:33695200-33696600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:33695400-33696600	Enhancers	HSMM	muscle
17	chr11:33696000-33696800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:33696400-33696600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:33696400-33704000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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