Variant report

Variant	rs73484914
Chromosome Location	chr11:33751670-33751671
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33750894..33752859-chr11:33753319..33757778,3	K562	blood:
2	chr11:33740386..33747828-chr11:33750725..33760528,16	K562	blood:
3	chr11:33750037..33753286-chr11:33754195..33759884,6	K562	blood:

Variant related genes	Relation type
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57867058	1.00[AMR][1000 genomes]
rs58412081	1.00[AMR][1000 genomes]
rs58451441	1.00[AMR][1000 genomes]
rs61217095	1.00[AMR][1000 genomes]
rs61576899	1.00[AMR][1000 genomes]
rs73482997	1.00[AMR][1000 genomes]
rs73490854	1.00[AMR][1000 genomes]
rs73490869	1.00[AMR][1000 genomes]
rs73491051	1.00[AMR][1000 genomes]
rs73492932	1.00[AMR][1000 genomes]
rs73494779	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33723400-33753400	Weak transcription	Primary B cells from cord blood	blood
2	chr11:33741000-33752000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:33744000-33755400	Weak transcription	Brain Germinal Matrix	brain
4	chr11:33744000-33755800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:33744000-33756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:33744200-33755600	Weak transcription	Fetal Brain Female	brain
7	chr11:33744400-33756200	Weak transcription	Primary T cells from cord blood	blood
8	chr11:33744600-33755400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr11:33744800-33753600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:33744800-33754600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:33745000-33753400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr11:33745400-33756200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:33746200-33752200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:33746200-33754000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:33746200-33756200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:33746400-33751800	Weak transcription	Liver	Liver
17	chr11:33746400-33752000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:33746400-33753000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr11:33746400-33753000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr11:33746400-33753000	Weak transcription	Aorta	Aorta
21	chr11:33746400-33753000	Weak transcription	Lung	lung
22	chr11:33746400-33753000	Weak transcription	Pancreas	Pancrea
23	chr11:33746400-33753000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:33746400-33753000	Weak transcription	Small Intestine	intestine
25	chr11:33746400-33753400	Weak transcription	Colonic Mucosa	Colon
26	chr11:33746400-33755200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:33746400-33755600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:33746600-33751800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:33746600-33751800	Weak transcription	Esophagus	oesophagus
30	chr11:33746600-33751800	Weak transcription	Ovary	ovary
31	chr11:33746600-33752000	Weak transcription	HSMMtube	muscle
32	chr11:33746600-33753000	Weak transcription	Fetal Thymus	thymus
33	chr11:33746600-33753600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:33746600-33753800	Weak transcription	Gastric	stomach
35	chr11:33746600-33754200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:33746600-33755400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:33746600-33755600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:33746600-33755600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:33746600-33755800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:33746600-33756400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr11:33746600-33756400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:33746600-33756400	Weak transcription	Fetal Kidney	kidney
43	chr11:33746600-33756600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:33746800-33751800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:33746800-33754400	Weak transcription	Stomach Mucosa	stomach
46	chr11:33747000-33751800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:33747000-33751800	Weak transcription	Adipose Nuclei	Adipose
48	chr11:33747000-33752000	Weak transcription	Fetal Lung	lung
49	chr11:33747000-33753000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:33747000-33754000	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links