Variant report

Variant	rs58414828
Chromosome Location	chr8:69426550-69426551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16934676	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2380469	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2380470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2380471	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4474010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57831430	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59742505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472401	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6472403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6472404	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6981661	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6981803	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6982414	0.94[ASN][1000 genomes]
rs6982892	0.89[ASN][1000 genomes]
rs6986697	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6986715	0.94[ASN][1000 genomes]
rs73266559	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73266567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73683538	0.94[ASN][1000 genomes]
rs7812638	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7821486	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7821782	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822196	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7822229	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7822332	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7822643	0.99[ASN][1000 genomes]
rs7823068	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7826853	0.99[ASN][1000 genomes]
rs7839616	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7840898	0.99[ASN][1000 genomes]
rs7841510	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1023810	chr8:69308665-69440129	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539644	chr8:69308665-69440129	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv890981	chr8:69413110-69534542	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv890982	chr8:69420911-69468914	Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69423800-69445600	Weak transcription	Aorta	Aorta
2	chr8:69425000-69426600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:69425000-69426800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:69425200-69426600	Enhancers	Placenta	Placenta
5	chr8:69425400-69426600	Enhancers	Colon Smooth Muscle	Colon
6	chr8:69425600-69426800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:69425800-69426600	Enhancers	Fetal Stomach	stomach
8	chr8:69425800-69426800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:69425800-69426800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:69426000-69426600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:69426000-69426600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:69426200-69426800	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr8:69426200-69426800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr8:69426200-69427200	Weak transcription	Fetal Lung	lung

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