Variant report
| Variant | rs6982892 |
|---|---|
| Chromosome Location | chr8:69415749-69415750 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs16934676 | 0.89[ASN][1000 genomes] |
| rs16934677 | 0.88[ASN][1000 genomes] |
| rs2380469 | 0.89[ASN][1000 genomes] |
| rs2380470 | 0.89[ASN][1000 genomes] |
| rs2380471 | 0.88[ASN][1000 genomes] |
| rs4474010 | 0.89[ASN][1000 genomes] |
| rs57831430 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs58414828 | 0.89[ASN][1000 genomes] |
| rs59742505 | 0.89[ASN][1000 genomes] |
| rs6472401 | 0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6472403 | 0.88[ASN][1000 genomes] |
| rs6472404 | 0.88[ASN][1000 genomes] |
| rs6981661 | 0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6981803 | 0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6982414 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6986697 | 0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6986715 | 0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73266559 | 0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73266567 | 0.88[ASN][1000 genomes] |
| rs73683538 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7812638 | 0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7821486 | 0.88[ASN][1000 genomes] |
| rs7821782 | 0.89[ASN][1000 genomes] |
| rs7822196 | 0.88[ASN][1000 genomes] |
| rs7822229 | 0.88[ASN][1000 genomes] |
| rs7822332 | 0.88[ASN][1000 genomes] |
| rs7822643 | 0.88[ASN][1000 genomes] |
| rs7823068 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7826853 | 0.88[ASN][1000 genomes] |
| rs7839616 | 0.88[ASN][1000 genomes] |
| rs7840898 | 0.88[ASN][1000 genomes] |
| rs7841510 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948687 | chr8:69041121-69642540 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023810 | chr8:69308665-69440129 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv539644 | chr8:69308665-69440129 | Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv890981 | chr8:69413110-69534542 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69415200-69416600 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
