Variant report

Variant	rs6472401
Chromosome Location	chr8:69424487-69424488
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69424228..69426143-chr8:69430126..69432077,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16934676	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16934677	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2380469	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2380470	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2380471	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4474010	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57831430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58414828	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59742505	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6472403	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6472404	0.99[ASN][1000 genomes]
rs6981661	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6981803	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6982414	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6982892	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6986697	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986715	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73266559	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266567	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs73683538	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7812638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821486	0.99[ASN][1000 genomes]
rs7821782	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7822196	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7822229	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7822332	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7822643	0.99[ASN][1000 genomes]
rs7823068	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826853	0.99[ASN][1000 genomes]
rs7839616	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7840898	0.99[ASN][1000 genomes]
rs7841510	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1023810	chr8:69308665-69440129	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539644	chr8:69308665-69440129	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv890981	chr8:69413110-69534542	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv890982	chr8:69420911-69468914	Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69422000-69425800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:69422200-69425000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:69422400-69425200	Weak transcription	Placenta	Placenta
4	chr8:69423800-69445600	Weak transcription	Aorta	Aorta

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