Variant report

Variant	rs58418821
Chromosome Location	chr4:87005964-87005965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12640230	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12642872	0.92[ASN][1000 genomes]
rs12642887	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12643642	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1436522	0.87[ASN][1000 genomes]
rs2043648	0.84[ASN][1000 genomes]
rs2043650	0.84[ASN][1000 genomes]
rs2282595	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3755971	0.96[ASN][1000 genomes]
rs3775164	0.92[ASN][1000 genomes]
rs3775166	0.84[ASN][1000 genomes]
rs3775168	0.84[ASN][1000 genomes]
rs3775169	0.84[ASN][1000 genomes]
rs3775172	0.92[ASN][1000 genomes]
rs3775175	0.96[ASN][1000 genomes]
rs3775176	0.96[ASN][1000 genomes]
rs3775180	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3822035	0.92[ASN][1000 genomes]
rs3822036	0.96[ASN][1000 genomes]
rs4382028	0.87[ASN][1000 genomes]
rs4479697	0.84[ASN][1000 genomes]
rs55663953	0.94[ASN][1000 genomes]
rs59198932	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs59693882	0.96[ASN][1000 genomes]
rs59784739	0.90[ASN][1000 genomes]
rs60726298	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6531890	0.83[ASN][1000 genomes]
rs6856450	0.84[ASN][1000 genomes]
rs7691896	0.84[ASN][1000 genomes]
rs7692516	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594761	chr4:86976413-87018488	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87004000-87028400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:87004200-87006400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:87005000-87007600	Weak transcription	Small Intestine	intestine
4	chr4:87005000-87011000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:87005000-87050400	Weak transcription	Brain Angular Gyrus	brain
6	chr4:87005200-87007200	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:87005400-87006200	Weak transcription	Fetal Lung	lung
8	chr4:87005400-87010200	Weak transcription	Brain Germinal Matrix	brain
9	chr4:87005400-87010400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:87005400-87011000	Weak transcription	Brain Anterior Caudate	brain
11	chr4:87005400-87011000	Weak transcription	Pancreas	Pancrea
12	chr4:87005400-87011200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:87005400-87028200	Weak transcription	Ovary	ovary
14	chr4:87005400-87028400	Weak transcription	Fetal Stomach	stomach
15	chr4:87005600-87007000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:87005600-87010800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:87005600-87023000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:87005600-87026200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:87005600-87031200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:87005600-87035200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:87005800-87006600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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