Variant report

Variant	rs12642872
Chromosome Location	chr4:86943892-86943893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1002484	1.00[AMR][1000 genomes]
rs12640230	0.96[ASN][1000 genomes]
rs12642887	0.96[ASN][1000 genomes]
rs12643642	0.92[ASN][1000 genomes]
rs1436522	0.87[ASN][1000 genomes]
rs17011308	1.00[EUR][1000 genomes]
rs2043648	0.91[ASN][1000 genomes]
rs2043650	0.91[ASN][1000 genomes]
rs2282595	0.96[ASN][1000 genomes]
rs3755971	0.96[ASN][1000 genomes]
rs3775164	1.00[ASN][1000 genomes]
rs3775166	0.91[ASN][1000 genomes]
rs3775168	0.91[ASN][1000 genomes]
rs3775169	0.91[ASN][1000 genomes]
rs3775172	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775175	0.96[ASN][1000 genomes]
rs3775176	0.96[ASN][1000 genomes]
rs3775180	0.96[ASN][1000 genomes]
rs3822035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822036	0.96[ASN][1000 genomes]
rs4382028	0.87[ASN][1000 genomes]
rs4414943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4414944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4479697	0.91[ASN][1000 genomes]
rs55663953	0.94[ASN][1000 genomes]
rs55887433	1.00[EUR][1000 genomes]
rs56724302	1.00[EUR][1000 genomes]
rs57113506	1.00[EUR][1000 genomes]
rs58137716	1.00[EUR][1000 genomes]
rs58418821	0.92[ASN][1000 genomes]
rs58772106	1.00[EUR][1000 genomes]
rs59198932	0.96[ASN][1000 genomes]
rs59693882	0.96[ASN][1000 genomes]
rs59784739	0.98[ASN][1000 genomes]
rs59822525	1.00[EUR][1000 genomes]
rs60313477	1.00[EUR][1000 genomes]
rs60337363	1.00[EUR][1000 genomes]
rs60726298	0.92[ASN][1000 genomes]
rs6531890	0.91[ASN][1000 genomes]
rs6531891	0.82[ASN][1000 genomes]
rs6856450	0.91[ASN][1000 genomes]
rs73837404	1.00[EUR][1000 genomes]
rs73837407	1.00[EUR][1000 genomes]
rs73837408	1.00[EUR][1000 genomes]
rs73837410	1.00[EUR][1000 genomes]
rs73837412	1.00[EUR][1000 genomes]
rs73837413	1.00[EUR][1000 genomes]
rs73837414	1.00[EUR][1000 genomes]
rs73837415	1.00[EUR][1000 genomes]
rs73837416	1.00[EUR][1000 genomes]
rs73837417	1.00[EUR][1000 genomes]
rs73837424	1.00[EUR][1000 genomes]
rs73837426	1.00[EUR][1000 genomes]
rs746438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7670786	1.00[EUR][1000 genomes]
rs7681273	1.00[EUR][1000 genomes]
rs7681951	1.00[EUR][1000 genomes]
rs7688633	1.00[EUR][1000 genomes]
rs7689936	1.00[EUR][1000 genomes]
rs7691896	0.91[ASN][1000 genomes]
rs7692516	0.91[ASN][1000 genomes]
rs7696878	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86917000-86954000	Weak transcription	Pancreas	Pancrea
3	chr4:86928600-86953400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:86932800-86953800	Weak transcription	Fetal Lung	lung
5	chr4:86934200-86953400	Weak transcription	Aorta	Aorta
6	chr4:86935200-86949200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:86936000-86948000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
9	chr4:86936400-86954600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:86936600-86948000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:86936800-86953600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:86938200-86954200	Weak transcription	Fetal Kidney	kidney
14	chr4:86938400-86953400	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:86938600-86945800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:86938600-86949000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:86938600-86953400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:86938600-86953600	Weak transcription	Brain Angular Gyrus	brain
19	chr4:86938600-86954000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:86938600-86957800	Weak transcription	Fetal Brain Female	brain
21	chr4:86939200-86953800	Weak transcription	Fetal Stomach	stomach
22	chr4:86943200-86944600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:86943200-86944600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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