Variant report

Variant	rs7670786
Chromosome Location	chr4:87038872-87038873
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXM1	chr4:87038638-87039507	SK-N-SH	brain:	n/a	n/a
2	TCF12	chr4:87038514-87039801	SK-N-SH	brain:	n/a	n/a
3	FOSL2	chr4:87038732-87039714	SK-N-SH	brain:	n/a	n/a
4	GATA3	chr4:87038575-87039775	SK-N-SH	brain:	n/a	chr4:87039480-87039491
5	STAT3	chr4:87038835-87039726	MCF10A-Er-Src	breast:	n/a	n/a
6	TEAD4	chr4:87038587-87039704	SK-N-SH	brain:	n/a	n/a
7	EP300	chr4:87038711-87039767	SK-N-SH	brain:	n/a	n/a
8	STAT3	chr4:87038721-87039612	MCF10A-Er-Src	breast:	n/a	n/a
9	NFIC	chr4:87038573-87039587	SK-N-SH	brain:	n/a	n/a
10	PBX3	chr4:87038577-87039646	SK-N-SH	brain:	n/a	n/a
11	NFIC	chr4:87038485-87039815	SK-N-SH	brain:	n/a	n/a
12	RAD21	chr4:87038653-87039524	SK-N-SH_RA	brain:	n/a	n/a
13	MEF2A	chr4:87038759-87039671	SK-N-SH	brain:	n/a	n/a
14	REST	chr4:87038514-87039728	H1-neurons	neurons:	n/a	n/a
15	RXRA	chr4:87038662-87039746	SK-N-SH	brain:	n/a	n/a
16	EP300	chr4:87038599-87039572	SK-N-SH_RA	brain:	n/a	n/a
17	EP300	chr4:87038594-87039616	SK-N-SH_RA	brain:	n/a	n/a
18	SIN3AK20	chr4:87038782-87039493	SK-N-SH	brain:	n/a	n/a
19	EP300	chr4:87038541-87039650	SK-N-SH	brain:	n/a	n/a
20	TCF12	chr4:87038495-87039741	SK-N-SH	brain:	n/a	n/a
21	POLR2A	chr4:87038616-87039581	SK-N-SH	brain:	n/a	n/a
22	POLR2A	chr4:87038711-87038959	SK-N-SH	brain:	n/a	n/a
23	STAT3	chr4:87038730-87039662	MCF10A-Er-Src	breast:	n/a	n/a
24	EP300	chr4:87038477-87040418	SK-N-SH	brain:	n/a	chr4:87039897-87039911 chr4:87039891-87039905
25	PBX3	chr4:87038564-87039741	SK-N-SH	brain:	n/a	n/a
26	GATA3	chr4:87038465-87040310	SK-N-SH	brain:	n/a	chr4:87039480-87039491 chr4:87039830-87039839 chr4:87040237-87040245
27	JUND	chr4:87038658-87039607	SK-N-SH	brain:	n/a	n/a
28	TEAD4	chr4:87038544-87039731	SK-N-SH	brain:	n/a	n/a
29	STAT3	chr4:87038853-87039644	MCF10A-Er-Src	breast:	n/a	n/a
30	REST	chr4:87038687-87039430	H1-neurons	neurons:	n/a	n/a
31	FOXM1	chr4:87038606-87039817	SK-N-SH	brain:	n/a	n/a
32	RXRA	chr4:87038770-87039701	SK-N-SH	brain:	n/a	n/a
33	RAD21	chr4:87038682-87039449	SK-N-SH_RA	brain:	n/a	n/a
34	JUND	chr4:87038655-87039732	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000250062	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12642872	1.00[EUR][1000 genomes]
rs17011308	1.00[EUR][1000 genomes]
rs3775172	1.00[EUR][1000 genomes]
rs3822035	1.00[EUR][1000 genomes]
rs4414943	1.00[EUR][1000 genomes]
rs4414944	1.00[EUR][1000 genomes]
rs55887433	1.00[EUR][1000 genomes]
rs56724302	1.00[EUR][1000 genomes]
rs57113506	1.00[EUR][1000 genomes]
rs58137716	1.00[EUR][1000 genomes]
rs58772106	1.00[EUR][1000 genomes]
rs59822525	1.00[EUR][1000 genomes]
rs60313477	1.00[EUR][1000 genomes]
rs60337363	1.00[EUR][1000 genomes]
rs73837404	1.00[EUR][1000 genomes]
rs73837407	1.00[EUR][1000 genomes]
rs73837408	1.00[EUR][1000 genomes]
rs73837410	1.00[EUR][1000 genomes]
rs73837412	1.00[EUR][1000 genomes]
rs73837413	1.00[EUR][1000 genomes]
rs73837414	1.00[EUR][1000 genomes]
rs73837415	1.00[EUR][1000 genomes]
rs73837416	1.00[EUR][1000 genomes]
rs73837417	1.00[EUR][1000 genomes]
rs73837424	1.00[EUR][1000 genomes]
rs73837426	1.00[EUR][1000 genomes]
rs746438	1.00[EUR][1000 genomes]
rs7681273	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7688633	1.00[EUR][1000 genomes]
rs7689936	1.00[EUR][1000 genomes]
rs7696878	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005338	chr4:87023398-87108555	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87005000-87050400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:87035800-87077600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:87036400-87041200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:87036600-87039200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:87037000-87040200	Enhancers	NHDF-Ad	bronchial
6	chr4:87037200-87039000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:87038000-87041000	Enhancers	Osteobl	bone
8	chr4:87038000-87048600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:87038400-87039400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr4:87038400-87040200	Enhancers	NH-A	brain
11	chr4:87038600-87039200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:87038600-87039600	Enhancers	NHLF	lung
13	chr4:87038600-87039800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr4:87038600-87039800	Enhancers	Adipose Nuclei	Adipose
15	chr4:87038600-87040200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:87038600-87040200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:87038800-87039000	Enhancers	Brain Anterior Caudate	brain
18	chr4:87038800-87039200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:87038800-87039200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:87038800-87039200	Enhancers	Fetal Muscle Leg	muscle
21	chr4:87038800-87039400	Enhancers	Fetal Stomach	stomach
22	chr4:87038800-87039800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:87038800-87040000	Enhancers	Fetal Lung	lung

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