Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:87036612-87036649	LNCaP	prostate:	n/a	n/a

Variant related genes	Relation type
ENSG00000250062	TF binding region

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12642872	1.00[EUR][1000 genomes]
rs17011308	1.00[EUR][1000 genomes]
rs3775172	1.00[EUR][1000 genomes]
rs3822035	1.00[EUR][1000 genomes]
rs4414943	1.00[EUR][1000 genomes]
rs4414944	1.00[EUR][1000 genomes]
rs55887433	1.00[EUR][1000 genomes]
rs56724302	1.00[EUR][1000 genomes]
rs57113506	1.00[EUR][1000 genomes]
rs58137716	1.00[EUR][1000 genomes]
rs58772106	1.00[EUR][1000 genomes]
rs59822525	1.00[EUR][1000 genomes]
rs60313477	1.00[EUR][1000 genomes]
rs60337363	1.00[EUR][1000 genomes]
rs73837404	1.00[EUR][1000 genomes]
rs73837407	1.00[EUR][1000 genomes]
rs73837408	1.00[EUR][1000 genomes]
rs73837410	1.00[EUR][1000 genomes]
rs73837412	1.00[EUR][1000 genomes]
rs73837413	1.00[EUR][1000 genomes]
rs73837414	1.00[EUR][1000 genomes]
rs73837415	1.00[EUR][1000 genomes]
rs73837416	1.00[EUR][1000 genomes]
rs73837417	1.00[EUR][1000 genomes]
rs73837424	1.00[EUR][1000 genomes]
rs73837426	1.00[EUR][1000 genomes]
rs746438	1.00[EUR][1000 genomes]
rs7670786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681273	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7688633	1.00[EUR][1000 genomes]
rs7689936	1.00[EUR][1000 genomes]
rs7696878	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005338	chr4:87023398-87108555	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87005000-87050400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:87023400-87038800	Weak transcription	Brain Anterior Caudate	brain
3	chr4:87030400-87038400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:87035000-87037200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:87035800-87077600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:87036200-87038200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:87036400-87041200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:87036600-87038000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:87036600-87038800	Weak transcription	Fetal Stomach	stomach
10	chr4:87036600-87039200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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