Variant report

Variant	rs17011308
Chromosome Location	chr4:86935251-86935252
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:86934859-86935554	HUVEC	blood vessel:	n/a	n/a
2	STAT3	chr4:86934888-86935285	MCF10A-Er-Src	breast:	n/a	n/a
3	GATA3	chr4:86934585-86935306	SK-N-SH	brain:	n/a	chr4:86934846-86934853 chr4:86934878-86934894

Variant related genes	Relation type
ENSG00000261496	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12642872	1.00[EUR][1000 genomes]
rs3775172	1.00[EUR][1000 genomes]
rs3822035	1.00[EUR][1000 genomes]
rs4414943	1.00[EUR][1000 genomes]
rs4414944	1.00[EUR][1000 genomes]
rs55887433	1.00[EUR][1000 genomes]
rs56724302	1.00[EUR][1000 genomes]
rs57113506	1.00[EUR][1000 genomes]
rs58137716	1.00[EUR][1000 genomes]
rs58772106	1.00[EUR][1000 genomes]
rs59822525	1.00[EUR][1000 genomes]
rs60313477	1.00[EUR][1000 genomes]
rs60337363	1.00[EUR][1000 genomes]
rs73837404	1.00[EUR][1000 genomes]
rs73837407	1.00[EUR][1000 genomes]
rs73837408	1.00[EUR][1000 genomes]
rs73837410	1.00[EUR][1000 genomes]
rs73837412	1.00[EUR][1000 genomes]
rs73837413	1.00[EUR][1000 genomes]
rs73837414	1.00[EUR][1000 genomes]
rs73837415	1.00[EUR][1000 genomes]
rs73837416	1.00[EUR][1000 genomes]
rs73837417	1.00[EUR][1000 genomes]
rs73837424	1.00[EUR][1000 genomes]
rs73837426	1.00[EUR][1000 genomes]
rs746438	1.00[EUR][1000 genomes]
rs7670786	1.00[EUR][1000 genomes]
rs7681273	1.00[EUR][1000 genomes]
rs7681951	1.00[EUR][1000 genomes]
rs7688633	1.00[EUR][1000 genomes]
rs7689936	1.00[EUR][1000 genomes]
rs7696878	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86935800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:86916800-86985400	Weak transcription	Ovary	ovary
3	chr4:86917000-86935800	Weak transcription	Spleen	Spleen
4	chr4:86917000-86954000	Weak transcription	Pancreas	Pancrea
5	chr4:86917400-86940400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:86919400-86941200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:86925400-86937200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:86925600-86935600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:86925600-86937400	Weak transcription	Fetal Kidney	kidney
10	chr4:86927400-86935400	Weak transcription	Primary B cells from cord blood	blood
11	chr4:86928400-86937800	Weak transcription	Fetal Stomach	stomach
12	chr4:86928600-86953400	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:86931600-86937600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:86931800-86937600	Enhancers	Osteobl	bone
15	chr4:86932400-86935800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:86932400-86937600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:86932600-86936400	Weak transcription	HUVEC	blood vessel
18	chr4:86932600-86937800	Weak transcription	Brain Angular Gyrus	brain
19	chr4:86932800-86935800	Weak transcription	NHLF	lung
20	chr4:86932800-86953800	Weak transcription	Fetal Lung	lung
21	chr4:86933000-86937600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:86933400-86940200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr4:86934200-86942200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:86934200-86953400	Weak transcription	Aorta	Aorta
25	chr4:86934400-86935400	Enhancers	NH-A	brain
26	chr4:86934400-86936000	Enhancers	HSMM	muscle
27	chr4:86934400-86937400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:86934400-86937800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr4:86934800-86935400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:86935000-86936200	Enhancers	Fetal Heart	heart
31	chr4:86935000-86936800	Enhancers	NHDF-Ad	bronchial
32	chr4:86935000-86937400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr4:86935000-86937600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:86935000-86937600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:86935200-86935400	Enhancers	Psoas Muscle	Psoas
36	chr4:86935200-86935400	Enhancers	Right Ventricle	heart
37	chr4:86935200-86935600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr4:86935200-86935600	Enhancers	HSMMtube	muscle
39	chr4:86935200-86936000	Enhancers	Adipose Nuclei	Adipose
40	chr4:86935200-86936000	Enhancers	Left Ventricle	heart
41	chr4:86935200-86936600	Enhancers	Right Atrium	heart
42	chr4:86935200-86937400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr4:86935200-86942200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:86935200-86949200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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