Variant report

Variant	rs58421161
Chromosome Location	chr10:45986842-45986843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45980306..45983140-chr10:45986596..45988629,2	K562	blood:
2	chr10:45966219..45968342-chr10:45984924..45988561,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12253903	0.83[AMR][1000 genomes]
rs12776336	0.83[AMR][1000 genomes]
rs56749023	0.83[AMR][1000 genomes]
rs58393353	1.00[AMR][1000 genomes]
rs58967087	0.83[AMR][1000 genomes]
rs60481109	0.83[AMR][1000 genomes]
rs60710398	0.83[AMR][1000 genomes]
rs73285358	0.83[AMR][1000 genomes]
rs73285360	0.83[AMR][1000 genomes]
rs73285365	0.83[AMR][1000 genomes]
rs73285375	0.83[AMR][1000 genomes]
rs73285378	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73285382	0.83[AMR][1000 genomes]
rs73285386	0.83[AMR][1000 genomes]
rs73285401	0.83[AMR][1000 genomes]
rs73287368	0.83[AMR][1000 genomes]
rs73287373	0.83[AMR][1000 genomes]
rs73287377	0.83[AMR][1000 genomes]
rs73287378	0.83[AMR][1000 genomes]
rs73287380	0.83[AMR][1000 genomes]
rs73287382	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287385	0.83[AMR][1000 genomes]
rs73287387	0.83[AMR][1000 genomes]
rs73287389	0.83[AMR][1000 genomes]
rs73287393	0.83[AMR][1000 genomes]
rs73287396	1.00[AMR][1000 genomes]
rs73289214	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45972200-45988000	Weak transcription	Spleen	Spleen
2	chr10:45974800-45990600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:45978600-46000800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:45980800-45988800	Weak transcription	Fetal Brain Female	brain
5	chr10:45981200-45987200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:45981800-45987400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:45981800-45988000	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:45984000-45988200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:45984000-45988800	Weak transcription	Right Atrium	heart
10	chr10:45984000-45989000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:45984000-45989800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:45984000-45991400	Weak transcription	Fetal Lung	lung
13	chr10:45984200-45989400	Weak transcription	Liver	Liver
14	chr10:45984200-45990400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:45984200-45991400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:45984200-46011000	Weak transcription	Left Ventricle	heart
17	chr10:45984600-45987200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:45984600-45988600	Weak transcription	Ovary	ovary
19	chr10:45984600-45989800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:45984600-45990800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:45984800-45990600	Weak transcription	Primary T cells from cord blood	blood
22	chr10:45984800-45991600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:45984800-45993400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:45986000-45987000	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr10:45986000-45988400	Weak transcription	Primary B cells from cord blood	blood
26	chr10:45986200-45987000	Enhancers	Placenta	Placenta
27	chr10:45986600-45988400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:45986600-45988800	Weak transcription	Primary hematopoietic stem cells	blood

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