Variant report

Variant	rs73287368
Chromosome Location	chr10:46000452-46000453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12253903	1.00[AMR][1000 genomes]
rs12776336	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56749023	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57973254	0.90[AFR][1000 genomes]
rs58393353	0.83[AMR][1000 genomes]
rs58421161	0.83[AMR][1000 genomes]
rs58437785	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58967087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60040820	0.90[AFR][1000 genomes]
rs60481109	1.00[AMR][1000 genomes]
rs60710398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285378	1.00[AMR][1000 genomes]
rs73285382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287380	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287382	0.83[AMR][1000 genomes]
rs73287385	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287389	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287393	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287396	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73289212	0.85[AMR][1000 genomes]
rs73289214	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289290	0.90[AFR][1000 genomes]
rs73289300	0.83[AMR][1000 genomes]
rs73291106	0.83[AMR][1000 genomes]
rs73292804	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv895111	chr10:45989745-46071900	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45978600-46000800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:45984200-46011000	Weak transcription	Left Ventricle	heart
3	chr10:45989200-46015200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:45998800-46000800	Weak transcription	Liver	Liver
5	chr10:45998800-46009600	Weak transcription	Pancreas	Pancrea
6	chr10:45999000-46025600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:46000000-46000600	Enhancers	Pancreatic Islets	Pancreatic Islet

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