Variant report

Variant	rs73285375
Chromosome Location	chr10:45973077-45973078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45965669..45968296-chr10:45969406..45974419,5	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12253903	1.00[AMR][1000 genomes]
rs12776336	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56749023	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57973254	0.90[AFR][1000 genomes]
rs58393353	0.83[AMR][1000 genomes]
rs58421161	0.83[AMR][1000 genomes]
rs58437785	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58967087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60040820	0.90[AFR][1000 genomes]
rs60481109	1.00[AMR][1000 genomes]
rs60710398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285378	1.00[AMR][1000 genomes]
rs73285382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287380	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287382	0.83[AMR][1000 genomes]
rs73287385	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287389	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287393	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287396	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73289212	0.85[AMR][1000 genomes]
rs73289214	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289290	0.90[AFR][1000 genomes]
rs73289300	0.83[AMR][1000 genomes]
rs73291106	0.83[AMR][1000 genomes]
rs73292804	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45966400-45979800	Weak transcription	Thymus	Thymus
2	chr10:45967600-45974800	Weak transcription	Psoas Muscle	Psoas
3	chr10:45967600-45979200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:45967600-45979600	Weak transcription	Ovary	ovary
5	chr10:45967600-45983400	Weak transcription	Right Atrium	heart
6	chr10:45967800-45980200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:45967800-45985200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:45968000-45986000	Weak transcription	HepG2	liver
9	chr10:45969400-45983800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:45969600-45983400	Weak transcription	Liver	Liver
11	chr10:45969600-45983400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:45969800-45983400	Weak transcription	Pancreas	Pancrea
13	chr10:45970600-45983400	Weak transcription	Left Ventricle	heart
14	chr10:45970800-45983400	Weak transcription	Gastric	stomach
15	chr10:45971200-45973800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:45971200-45979800	Weak transcription	Lung	lung
17	chr10:45971400-45973800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
18	chr10:45971400-45983800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:45971600-45979200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:45972200-45988000	Weak transcription	Spleen	Spleen
21	chr10:45973000-45973200	Active TSS	Aorta	Aorta
22	chr10:45973000-45973400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links