Variant report

Variant	rs58437785
Chromosome Location	chr10:46028698-46028699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12253903	0.83[AMR][1000 genomes]
rs12776336	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56749023	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57973254	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58967087	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60040820	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60481109	0.83[AMR][1000 genomes]
rs60710398	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73285358	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73285360	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73285365	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73285375	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73285378	0.83[AMR][1000 genomes]
rs73285382	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73285386	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73285401	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73287368	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73287373	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73287377	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73287378	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73287380	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73287385	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73287387	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73287389	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73287393	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73287396	0.95[AFR][1000 genomes]
rs73289214	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73289290	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73289300	1.00[AMR][1000 genomes]
rs73291106	1.00[AMR][1000 genomes]
rs73292804	1.00[AMR][1000 genomes]
rs73292807	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv895111	chr10:45989745-46071900	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1041417	chr10:46021181-46088061	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv528750	chr10:46024620-46076235	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1052233	chr10:46024620-46088061	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1047117	chr10:46027942-46075946	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46005400-46029800	Weak transcription	Fetal Kidney	kidney
2	chr10:46009400-46044400	Weak transcription	Thymus	Thymus
3	chr10:46010000-46056000	Weak transcription	Esophagus	oesophagus
4	chr10:46010200-46028800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:46011600-46030200	Weak transcription	HepG2	liver
6	chr10:46014400-46070000	Weak transcription	Psoas Muscle	Psoas
7	chr10:46015600-46043400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr10:46017800-46029600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:46018000-46052800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:46018400-46040400	Weak transcription	K562	blood
11	chr10:46019200-46039200	Weak transcription	Fetal Intestine Large	intestine
12	chr10:46021800-46029400	Weak transcription	Brain Germinal Matrix	brain
13	chr10:46021800-46030200	Weak transcription	Primary B cells from cord blood	blood
14	chr10:46022000-46028800	Weak transcription	Placenta	Placenta
15	chr10:46022000-46029800	Weak transcription	Primary T cells from cord blood	blood
16	chr10:46022000-46030200	Weak transcription	Gastric	stomach
17	chr10:46022000-46030400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:46022000-46032600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:46022000-46043400	Weak transcription	Brain Angular Gyrus	brain
20	chr10:46022000-46046600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:46022200-46029800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:46022200-46030000	Weak transcription	Brain Substantia Nigra	brain
23	chr10:46022200-46043600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:46022800-46030200	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:46024400-46052800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:46024600-46044600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:46025600-46029200	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr10:46025800-46028800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr10:46026200-46057600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:46026400-46044400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:46027000-46028800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:46027000-46028800	Strong transcription	Primary hematopoietic stem cells	blood
33	chr10:46027000-46028800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:46027000-46029600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:46027200-46028800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:46027200-46028800	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr10:46027200-46028800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr10:46027200-46043200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:46027200-46047000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:46027400-46028800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:46027400-46028800	Strong transcription	Liver	Liver
42	chr10:46027400-46028800	Strong transcription	Left Ventricle	heart
43	chr10:46027600-46039400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr10:46027800-46030200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:46028000-46030800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:46028200-46029000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:46028200-46030000	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:46028200-46030200	Weak transcription	Pancreas	Pancrea
49	chr10:46028200-46033200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr10:46028200-46039400	Weak transcription	Fetal Intestine Small	intestine

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