Variant report

Variant	rs73291106
Chromosome Location	chr10:46092052-46092053
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:46090407..46092284-chr10:46092832..46094617,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12253903	0.83[AMR][1000 genomes]
rs12776336	0.83[AMR][1000 genomes]
rs56749023	0.83[AMR][1000 genomes]
rs57973254	0.83[AMR][1000 genomes]
rs58393353	0.81[AFR][1000 genomes]
rs58437785	1.00[AMR][1000 genomes]
rs58967087	0.83[AMR][1000 genomes]
rs60040820	0.83[AMR][1000 genomes]
rs60481109	0.83[AMR][1000 genomes]
rs60704479	0.89[AFR][1000 genomes]
rs60710398	0.83[AMR][1000 genomes]
rs73285358	0.83[AMR][1000 genomes]
rs73285360	0.83[AMR][1000 genomes]
rs73285365	0.83[AMR][1000 genomes]
rs73285375	0.83[AMR][1000 genomes]
rs73285378	0.83[AMR][1000 genomes]
rs73285382	0.83[AMR][1000 genomes]
rs73285386	0.83[AMR][1000 genomes]
rs73285401	0.83[AMR][1000 genomes]
rs73287368	0.83[AMR][1000 genomes]
rs73287373	0.83[AMR][1000 genomes]
rs73287377	0.83[AMR][1000 genomes]
rs73287378	0.83[AMR][1000 genomes]
rs73287380	0.83[AMR][1000 genomes]
rs73287382	0.81[AFR][1000 genomes]
rs73287385	0.83[AMR][1000 genomes]
rs73287387	0.83[AMR][1000 genomes]
rs73287389	0.83[AMR][1000 genomes]
rs73287393	0.83[AMR][1000 genomes]
rs73289214	0.83[AMR][1000 genomes]
rs73289290	0.83[AMR][1000 genomes]
rs73289300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292804	1.00[AMR][1000 genomes]
rs73292807	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1050880	chr10:46091441-46160597	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv540588	chr10:46091441-46160597	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46090400-46092600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:46090400-46094200	Weak transcription	Small Intestine	intestine
3	chr10:46090600-46167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:46090800-46092800	Enhancers	Fetal Intestine Small	intestine
5	chr10:46090800-46094800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:46090800-46095800	Enhancers	Fetal Intestine Large	intestine
7	chr10:46090800-46096000	Weak transcription	Right Ventricle	heart
8	chr10:46091000-46092800	Enhancers	HepG2	liver
9	chr10:46091000-46094000	Weak transcription	Liver	Liver
10	chr10:46091000-46094400	Weak transcription	K562	blood
11	chr10:46091000-46095600	Weak transcription	Duodenum Mucosa	Duodenum

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