Variant report

Variant	rs584308
Chromosome Location	chr13:54734591-54734592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2576140	0.87[ASN][1000 genomes]
rs2818221	0.89[ASN][1000 genomes]
rs505155	0.87[ASN][1000 genomes]
rs524486	0.87[ASN][1000 genomes]
rs586049	1.00[ASN][1000 genomes]
rs625472	0.89[ASN][1000 genomes]
rs651356	1.00[ASN][1000 genomes]
rs662226	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54722600-54736200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:54722600-54741200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:54731200-54739000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr13:54733600-54736600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:54734200-54736600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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