Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2576139	0.95[EUR][1000 genomes]
rs2576140	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782516	0.95[EUR][1000 genomes]
rs2818221	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs490751	0.95[EUR][1000 genomes]
rs493274	0.95[EUR][1000 genomes]
rs496180	0.95[EUR][1000 genomes]
rs505155	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525758	0.90[EUR][1000 genomes]
rs556714	0.95[EUR][1000 genomes]
rs568227	0.90[EUR][1000 genomes]
rs572761	0.95[EUR][1000 genomes]
rs584308	0.87[ASN][1000 genomes]
rs584860	0.95[EUR][1000 genomes]
rs586049	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs593897	0.95[EUR][1000 genomes]
rs596327	0.95[EUR][1000 genomes]
rs625472	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs631641	0.90[EUR][1000 genomes]
rs635395	0.90[EUR][1000 genomes]
rs651356	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs662226	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679177	0.95[EUR][1000 genomes]
rs795636	0.95[EUR][1000 genomes]
rs795659	0.90[EUR][1000 genomes]
rs9536647	0.90[EUR][1000 genomes]
rs9536655	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54768600-54773000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:54769000-54773000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:54769000-54774000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:54769000-54774400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:54769800-54772800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:54769800-54773200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:54770200-54773200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:54770400-54773000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr13:54770400-54774800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:54770600-54773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:54770600-54781000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr13:54771200-54771400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr13:54771200-54772800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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