Variant report

Variant	rs795659
Chromosome Location	chr13:54753972-54753973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2576139	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2576140	0.95[EUR][1000 genomes]
rs2782516	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2818221	0.93[EUR][1000 genomes]
rs490751	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs493274	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs496180	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs505155	0.95[EUR][1000 genomes]
rs524486	0.90[EUR][1000 genomes]
rs525758	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556714	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs568227	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572761	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs584860	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs586049	0.95[EUR][1000 genomes]
rs593897	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs596327	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs625472	0.93[EUR][1000 genomes]
rs631641	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635395	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651356	1.00[EUR][1000 genomes]
rs662226	0.95[EUR][1000 genomes]
rs679177	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs795636	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9536638	0.83[EUR][1000 genomes]
rs9536647	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs795659	GRAP2	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54750000-54754000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:54750000-54757200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:54750400-54754200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:54750400-54758000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:54751000-54757600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:54752400-54758000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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