Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2576139	1.00[EUR][1000 genomes]
rs2576140	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782516	1.00[EUR][1000 genomes]
rs2818221	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs490751	1.00[EUR][1000 genomes]
rs493274	1.00[EUR][1000 genomes]
rs496180	1.00[EUR][1000 genomes]
rs505155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524486	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525758	0.95[EUR][1000 genomes]
rs556714	1.00[EUR][1000 genomes]
rs568227	0.95[EUR][1000 genomes]
rs572761	1.00[EUR][1000 genomes]
rs584308	0.87[ASN][1000 genomes]
rs584860	1.00[EUR][1000 genomes]
rs586049	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs593897	1.00[EUR][1000 genomes]
rs596327	1.00[EUR][1000 genomes]
rs625472	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs631641	0.95[EUR][1000 genomes]
rs635395	0.95[EUR][1000 genomes]
rs651356	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs679177	1.00[EUR][1000 genomes]
rs795636	1.00[EUR][1000 genomes]
rs795659	0.95[EUR][1000 genomes]
rs9536647	0.95[EUR][1000 genomes]
rs9536655	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54775600-54784600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:54781000-54783600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:54781600-54784800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:54781800-54784600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:54782000-54784600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr13:54782400-54784600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:54782400-54784800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:54782600-54786800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:54783000-54784000	Enhancers	NHEK	skin
10	chr13:54783200-54785400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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