Variant report
| Variant | rs58435860 |
|---|---|
| Chromosome Location | chr10:119141138-119141139 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000165650 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11812488 | 1.00[EUR][1000 genomes] |
| rs11817105 | 1.00[EUR][1000 genomes] |
| rs12098832 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2532791 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2794437 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3026066 | 1.00[EUR][1000 genomes] |
| rs3026074 | 1.00[EUR][1000 genomes] |
| rs363261 | 1.00[EUR][1000 genomes] |
| rs363263 | 1.00[EUR][1000 genomes] |
| rs363269 | 1.00[EUR][1000 genomes] |
| rs363270 | 1.00[EUR][1000 genomes] |
| rs363293 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs363302 | 1.00[EUR][1000 genomes] |
| rs363412 | 1.00[EUR][1000 genomes] |
| rs363415 | 1.00[EUR][1000 genomes] |
| rs57748965 | 1.00[EUR][1000 genomes] |
| rs58524185 | 1.00[EUR][1000 genomes] |
| rs61093869 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7069306 | 1.00[EUR][1000 genomes] |
| rs7071623 | 1.00[EUR][1000 genomes] |
| rs7078973 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7083451 | 1.00[EUR][1000 genomes] |
| rs7086562 | 1.00[EUR][1000 genomes] |
| rs7088012 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73389862 | 1.00[EUR][1000 genomes] |
| rs73389865 | 1.00[EUR][1000 genomes] |
| rs73389875 | 1.00[EUR][1000 genomes] |
| rs73391193 | 1.00[EUR][1000 genomes] |
| rs74159161 | 1.00[EUR][1000 genomes] |
| rs74159164 | 1.00[EUR][1000 genomes] |
| rs74162303 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7919034 | 1.00[EUR][1000 genomes] |
| rs7922754 | 1.00[EUR][1000 genomes] |
| rs9943329 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:119138800-119142200 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
| 2 | chr10:119140600-119142000 | Weak transcription | K562 | blood |
