Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1375518	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17053916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17053918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17053949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2359791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2884798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56309833	1.00[EUR][1000 genomes]
rs56741949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57538371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57766380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58288863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58840083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61230886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6414574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73841933	1.00[AMR][1000 genomes]
rs73841992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73841993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73841994	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841995	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73841996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7627851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7637759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9825538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817210	chr3:54365684-54511164	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54378800-54389000	Weak transcription	Psoas Muscle	Psoas
2	chr3:54380000-54391200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:54383400-54387600	Weak transcription	Right Atrium	heart
4	chr3:54383400-54392600	Weak transcription	Right Ventricle	heart
5	chr3:54384000-54392400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:54384200-54387600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:54385800-54387600	Enhancers	Hela-S3	cervix
8	chr3:54386000-54387800	Weak transcription	Fetal Brain Female	brain
9	chr3:54387200-54392000	Enhancers	Fetal Lung	lung
10	chr3:54387200-54392600	Enhancers	Ovary	ovary
11	chr3:54387200-54394800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:54387400-54389400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:54387400-54390200	Enhancers	Left Ventricle	heart
14	chr3:54387400-54391800	Enhancers	Fetal Brain Male	brain
15	chr3:54387400-54392000	Enhancers	Adipose Nuclei	Adipose

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