Variant report

Variant	rs9825538
Chromosome Location	chr3:54573027-54573028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17053898	1.00[EUR][1000 genomes]
rs17053916	1.00[EUR][1000 genomes]
rs17053918	1.00[EUR][1000 genomes]
rs17053949	1.00[EUR][1000 genomes]
rs2359791	1.00[EUR][1000 genomes]
rs2884798	1.00[EUR][1000 genomes]
rs56309833	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56741949	1.00[EUR][1000 genomes]
rs57538371	1.00[EUR][1000 genomes]
rs57766380	1.00[EUR][1000 genomes]
rs58288863	1.00[EUR][1000 genomes]
rs58521503	1.00[EUR][1000 genomes]
rs58840083	1.00[EUR][1000 genomes]
rs61230886	1.00[EUR][1000 genomes]
rs6414574	1.00[EUR][1000 genomes]
rs7372750	0.85[AFR][1000 genomes]
rs73841992	1.00[EUR][1000 genomes]
rs73841993	1.00[EUR][1000 genomes]
rs73841995	1.00[EUR][1000 genomes]
rs73841996	1.00[EUR][1000 genomes]
rs7627851	1.00[EUR][1000 genomes]
rs7637759	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876810	chr3:54480798-54585416	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54571000-54575400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:54571200-54576600	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links