Variant report

Variant	rs73841933
Chromosome Location	chr3:54310749-54310750
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1375518	1.00[AMR][1000 genomes]
rs17053898	1.00[AMR][1000 genomes]
rs17053916	1.00[AMR][1000 genomes]
rs17053918	1.00[AMR][1000 genomes]
rs17053949	1.00[AMR][1000 genomes]
rs2359791	1.00[AMR][1000 genomes]
rs2884798	1.00[AMR][1000 genomes]
rs56741949	1.00[AMR][1000 genomes]
rs57538371	1.00[AMR][1000 genomes]
rs57766380	1.00[AMR][1000 genomes]
rs58288863	1.00[AMR][1000 genomes]
rs58521503	1.00[AMR][1000 genomes]
rs58840083	1.00[AMR][1000 genomes]
rs61230886	1.00[AMR][1000 genomes]
rs6414574	1.00[AMR][1000 genomes]
rs73841992	1.00[AMR][1000 genomes]
rs73841993	1.00[AMR][1000 genomes]
rs73841994	1.00[AMR][1000 genomes]
rs73841995	1.00[AMR][1000 genomes]
rs73841996	1.00[AMR][1000 genomes]
rs7627851	1.00[AMR][1000 genomes]
rs7637759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv876806	chr3:54256648-54330010	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54309200-54313000	Weak transcription	Hela-S3	cervix
2	chr3:54309200-54313200	Weak transcription	Right Atrium	heart
3	chr3:54310400-54311200	ZNF genes & repeats	Aorta	Aorta

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