Variant report

Variant	rs58521541
Chromosome Location	chr6:43986276-43986277
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60032608	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73424375	1.00[EUR][1000 genomes]
rs73424378	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73424380	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73424395	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761945	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768309	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768465	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7772862	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9381275	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462934	chr6:43956615-44007446	Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv603001	chr6:43956615-44007446	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43979400-44010400	Weak transcription	Pancreas	Pancrea
2	chr6:43979600-44002200	Weak transcription	Right Ventricle	heart
3	chr6:43980200-43991200	Weak transcription	Left Ventricle	heart
4	chr6:43981200-43988000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:43981800-43988200	Weak transcription	HSMM	muscle
6	chr6:43984400-43987400	Weak transcription	NHLF	lung
7	chr6:43984400-43987600	Weak transcription	NHDF-Ad	bronchial
8	chr6:43984600-43987000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:43984600-43988000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:43984600-43990000	Weak transcription	NH-A	brain
11	chr6:43984800-43987000	Weak transcription	Fetal Stomach	stomach
12	chr6:43984800-43987200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:43984800-43987200	Weak transcription	Fetal Lung	lung
14	chr6:43984800-43988000	Weak transcription	Osteobl	bone
15	chr6:43984800-43988200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:43985000-43987000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:43985200-43990200	Weak transcription	Hela-S3	cervix
18	chr6:43986000-43987000	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links