Variant report

Variant	rs73424378
Chromosome Location	chr6:43981060-43981061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58521541	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60032608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73424375	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73424380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73424395	1.00[EUR][1000 genomes]
rs7761945	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7768309	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7768465	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772862	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9381275	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462934	chr6:43956615-44007446	Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv603001	chr6:43956615-44007446	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43972800-43983600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:43972800-43984000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:43976600-43984000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:43978800-43984000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:43979000-43982000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:43979400-43984400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:43979400-44010400	Weak transcription	Pancreas	Pancrea
8	chr6:43979600-44002200	Weak transcription	Right Ventricle	heart
9	chr6:43980000-43984000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:43980200-43981600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:43980200-43981800	ZNF genes & repeats	NHLF	lung
12	chr6:43980200-43981800	ZNF genes & repeats	Osteobl	bone
13	chr6:43980200-43982400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:43980200-43991200	Weak transcription	Left Ventricle	heart
15	chr6:43980400-43981200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:43980400-43983200	Weak transcription	K562	blood
17	chr6:43980600-43984800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:43980800-43981800	ZNF genes & repeats	Hela-S3	cervix
19	chr6:43981000-43981200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links