Variant report

Variant	rs9381275
Chromosome Location	chr6:43980128-43980129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr6:43979833-43980161	A549	lung:	n/a	chr6:43979929-43979955 chr6:43980014-43980029
2	NR3C1	chr6:43979719-43980156	A549	lung:	n/a	chr6:43979929-43979955 chr6:43980014-43980029
3	POLR2A	chr6:43979713-43980340	Hela-S3	cervix:	n/a	n/a
4	MYC	chr6:43979874-43980246	MCF10A-Er-Src	breast:	n/a	chr6:43979981-43979990
5	JUN	chr6:43977807-43980470	K562	blood:	n/a	chr6:43978673-43978683 chr6:43978673-43978683 chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989
6	NR3C1	chr6:43979564-43980350	A549	lung:	n/a	chr6:43979929-43979955 chr6:43980014-43980029
7	MAZ	chr6:43979977-43980158	Hela-S3	cervix:	n/a	chr6:43979981-43979990
8	CREB1	chr6:43979910-43980198	A549	lung:	n/a	n/a
9	SP1	chr6:43979719-43980246	A549	lung:	n/a	n/a
10	JUND	chr6:43979689-43980245	K562	blood:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989
11	FOSL1	chr6:43979611-43980337	HCT-116	colon:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989
12	POLR2A	chr6:43978345-43980580	U87	brain:	n/a	n/a
13	CEBPB	chr6:43979713-43980381	A549	lung:	n/a	chr6:43980048-43980059
14	CCNT2	chr6:43979760-43980132	K562	blood:	n/a	n/a
15	TAF1	chr6:43979822-43980261	Hela-S3	cervix:	n/a	n/a
16	REST	chr6:43979856-43980200	Hela-S3	cervix:	n/a	n/a
17	USF1	chr6:43979877-43980228	A549	lung:	n/a	n/a
18	MAX	chr6:43979859-43980315	NB4	blood:	n/a	chr6:43979981-43979990
19	TEAD4	chr6:43979581-43980328	K562	blood:	n/a	n/a
20	POLR2A	chr6:43977750-43980558	U87	brain:	n/a	n/a
21	GATA3	chr6:43979705-43980309	A549	lung:	n/a	n/a
22	JUND	chr6:43979798-43980170	A549	lung:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989
23	SPI1	chr6:43979607-43980347	HL-60	blood:	n/a	chr6:43979862-43979875 chr6:43979863-43979872 chr6:43979861-43979874
24	JUN	chr6:43979865-43980181	Hela-S3	cervix:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989
25	MAX	chr6:43979941-43980207	Hela-S3	cervix:	n/a	chr6:43979981-43979990
26	ZBTB7A	chr6:43979896-43980176	HepG2	liver:	n/a	n/a
27	CEBPB	chr6:43979870-43980266	HepG2	liver:	n/a	chr6:43980048-43980059
28	RAD21	chr6:43978366-43980309	IMR90	lung:	n/a	n/a
29	CEBPB	chr6:43979859-43980178	K562	blood:	n/a	chr6:43980048-43980059
30	JUND	chr6:43979664-43980438	HCT-116	colon:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989
31	FOS	chr6:43979555-43980287	MCF10A-Er-Src	breast:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979979-43979990 chr6:43979980-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989
32	EP300	chr6:43979795-43980174	Hela-S3	cervix:	n/a	chr6:43979859-43979873 chr6:43979981-43979990
33	CHD2	chr6:43979865-43980140	Hela-S3	cervix:	n/a	n/a
34	FOSL2	chr6:43979736-43980336	A549	lung:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979978-43979989
35	FOS	chr6:43979304-43980198	HUVEC	blood vessel:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979979-43979990 chr6:43979980-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989
36	SP1	chr6:43979697-43980235	A549	lung:	n/a	n/a
37	STAT3	chr6:43978538-43980285	MCF10A-Er-Src	breast:	n/a	chr6:43980010-43980018 chr6:43980007-43980021 chr6:43980008-43980019
38	RCOR1	chr6:43977720-43980589	IMR90	lung:	n/a	n/a
39	CEBPB	chr6:43979908-43980158	HepG2	liver:	n/a	chr6:43980048-43980059
40	GTF2F1	chr6:43979846-43980240	Hela-S3	cervix:	n/a	n/a
41	FOSL2	chr6:43979869-43980238	MCF-7	breast:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979978-43979989
42	POLR2A	chr6:43979706-43980230	HCT-116	colon:	n/a	n/a
43	EP300	chr6:43979704-43980301	A549	lung:	n/a	chr6:43979859-43979873 chr6:43979981-43979990
44	FOXA1	chr6:43979745-43980242	A549	lung:	n/a	n/a
45	MAX	chr6:43979603-43980401	A549	lung:	n/a	chr6:43979981-43979990
46	SMC3	chr6:43979985-43980155	HepG2	liver:	n/a	n/a
47	FOSL2	chr6:43979684-43980290	HepG2	liver:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979978-43979989
48	FOSL2	chr6:43979831-43980147	A549	lung:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979978-43979989
49	CEBPB	chr6:43979804-43980236	A549	lung:	n/a	chr6:43980048-43980059
50	JUND	chr6:43979814-43980139	HepG2	liver:	n/a	chr6:43979980-43979990 chr6:43979981-43979989 chr6:43979980-43979990 chr6:43979981-43979988 chr6:43979980-43979990 chr6:43979979-43979990 chr6:43979979-43979991 chr6:43979980-43979990 chr6:43979981-43979989

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:43978197..43980312-chr6:44039943..44042223,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265518	TF binding region
ENSG00000231881	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11967633	1.00[CEU][hapmap]
rs58521541	0.89[EUR][1000 genomes]
rs60032608	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73424375	0.98[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73424378	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73424380	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73424395	0.89[EUR][1000 genomes]
rs7761945	0.89[EUR][1000 genomes]
rs7768309	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7768465	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7772862	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462934	chr6:43956615-44007446	Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv603001	chr6:43956615-44007446	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43971200-43980400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:43972800-43983600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:43972800-43984000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:43976600-43980200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:43976600-43984000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:43977600-43980600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:43977600-43980600	Enhancers	HMEC	breast
8	chr6:43977800-43980200	Enhancers	Left Ventricle	heart
9	chr6:43977800-43980400	Enhancers	K562	blood
10	chr6:43978000-43980400	Enhancers	NHEK	skin
11	chr6:43978200-43980400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:43978200-43980400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:43978200-43980400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:43978400-43980200	Enhancers	HUVEC	blood vessel
15	chr6:43978400-43980400	Bivalent Enhancer	HepG2	liver
16	chr6:43978600-43980400	Enhancers	NHDF-Ad	bronchial
17	chr6:43978800-43980600	Enhancers	Hela-S3	cervix
18	chr6:43978800-43984000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:43979000-43980400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:43979000-43982000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:43979400-43980200	Enhancers	NH-A	brain
22	chr6:43979400-43980400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:43979400-43984400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:43979400-44010400	Weak transcription	Pancreas	Pancrea
25	chr6:43979600-43980200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:43979600-44002200	Weak transcription	Right Ventricle	heart
27	chr6:43979800-43980200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:43979800-43980200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:43979800-43980200	Weak transcription	NHLF	lung
30	chr6:43979800-43980200	Weak transcription	Osteobl	bone
31	chr6:43979800-43980400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr6:43980000-43980200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr6:43980000-43980200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:43980000-43984000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links