Variant report

Variant	rs58527547
Chromosome Location	chr11:102424627-102424628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102419758..102422007-chr11:102423103..102425933,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11225310	1.00[ASN][1000 genomes]
rs17098329	1.00[ASN][1000 genomes]
rs17881703	1.00[ASN][1000 genomes]
rs59379441	1.00[ASN][1000 genomes]
rs59437179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61395048	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv826060	chr11:102414956-102425329	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102416400-102429400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:102416800-102434400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:102419600-102429200	Weak transcription	Lung	lung
4	chr11:102421800-102424800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:102422200-102425000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:102422600-102425400	Enhancers	HMEC	breast
7	chr11:102422800-102424800	Enhancers	Stomach Mucosa	stomach
8	chr11:102422800-102425000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:102422800-102425000	Enhancers	NHEK	skin
10	chr11:102423000-102425400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:102423200-102425200	Weak transcription	HSMMtube	muscle
12	chr11:102423600-102425400	Flanking Active TSS	GM12878-XiMat	blood
13	chr11:102423600-102427200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:102423600-102427400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:102423600-102430000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:102423800-102424800	Enhancers	Gastric	stomach
17	chr11:102423800-102425000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:102424000-102425200	Enhancers	HepG2	liver
19	chr11:102424000-102428800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:102424000-102432200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:102424400-102424800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr11:102424600-102424800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:102424600-102424800	Enhancers	Primary B cells from peripheral blood	blood
24	chr11:102424600-102425000	Enhancers	A549	lung
25	chr11:102424600-102429400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:102424600-102431000	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links