Variant report

Variant	rs59437179
Chromosome Location	chr11:102435555-102435556
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11225310	1.00[ASN][1000 genomes]
rs17098329	1.00[ASN][1000 genomes]
rs17881703	1.00[ASN][1000 genomes]
rs58527547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59379441	1.00[ASN][1000 genomes]
rs61395048	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102430200-102436200	Enhancers	Primary hematopoietic stem cells	blood
2	chr11:102431600-102435600	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:102431600-102435800	Weak transcription	Small Intestine	intestine
4	chr11:102431600-102436200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:102432600-102436200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:102433800-102435600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:102434000-102436000	Enhancers	HMEC	breast
8	chr11:102434400-102435600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:102434400-102435600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:102434400-102435800	Enhancers	HUVEC	blood vessel
11	chr11:102434600-102435600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:102434600-102435600	Enhancers	Osteobl	bone
13	chr11:102434600-102446600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:102434800-102435600	Enhancers	GM12878-XiMat	blood
15	chr11:102434800-102435600	Enhancers	NHEK	skin
16	chr11:102434800-102436800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links