Variant report

Variant	rs17098329
Chromosome Location	chr11:102413831-102413832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10219215	1.00[CHB][hapmap]
rs1058606	1.00[CHB][hapmap]
rs10895296	1.00[CHB][hapmap]
rs11225235	1.00[CHB][hapmap]
rs11225237	1.00[CHB][hapmap]
rs11225310	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11547915	1.00[CHB][hapmap]
rs11601671	1.00[CHB][hapmap]
rs11604008	1.00[CHB][hapmap]
rs11604189	1.00[CHB][hapmap]
rs11605066	1.00[CHB][hapmap]
rs11605133	1.00[CHB][hapmap]
rs11607908	1.00[CHB][hapmap]
rs12271457	1.00[CHB][hapmap]
rs12274405	1.00[CHB][hapmap]
rs12275185	1.00[CHB][hapmap]
rs12275349	1.00[CHB][hapmap]
rs12277594	1.00[CHB][hapmap]
rs12277853	1.00[CHB][hapmap]
rs12279056	1.00[CHB][hapmap]
rs12283885	1.00[CHB][hapmap]
rs12291114	1.00[CHB][hapmap]
rs12293094	1.00[CHB][hapmap]
rs12293834	1.00[CHB][hapmap]
rs12792649	1.00[CHB][hapmap]
rs12794864	1.00[ASN][1000 genomes]
rs17098292	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17098306	0.87[EUR][1000 genomes]
rs17350205	1.00[CHB][hapmap]
rs17350590	1.00[CHB][hapmap]
rs17880669	0.87[EUR][1000 genomes]
rs17881703	1.00[ASN][1000 genomes]
rs1943781	1.00[CHB][hapmap]
rs2436036	1.00[CHB][hapmap]
rs33945990	1.00[ASN][1000 genomes]
rs34422940	1.00[ASN][1000 genomes]
rs484068	1.00[CHB][hapmap]
rs485020	1.00[CHB][hapmap]
rs525305	1.00[CHB][hapmap]
rs531350	1.00[CHB][hapmap]
rs577850	1.00[CHB][hapmap]
rs58527547	1.00[ASN][1000 genomes]
rs59379441	1.00[ASN][1000 genomes]
rs59437179	1.00[ASN][1000 genomes]
rs60724341	1.00[ASN][1000 genomes]
rs61395048	1.00[ASN][1000 genomes]
rs61895369	1.00[ASN][1000 genomes]
rs637708	1.00[CHB][hapmap]
rs6590970	0.87[EUR][1000 genomes]
rs660908	1.00[CHB][hapmap]
rs670334	1.00[CHB][hapmap]
rs73593592	0.87[EUR][1000 genomes]
rs7926218	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv469990	chr11:102335609-102413943	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv556150	chr11:102335609-102415859	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv468854	chr11:102336617-102413943	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv556151	chr11:102336617-102413943	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102408200-102415400	Weak transcription	Primary B cells from cord blood	blood
2	chr11:102410600-102414800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:102413800-102417600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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