Variant report

Variant	rs58529679
Chromosome Location	chr8:67627164-67627165
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:67623840..67628206-chr8:67684536..67689963,10	MCF-7	breast:
2	chr8:67625790..67629580-chr8:67694202..67697997,3	MCF-7	breast:
3	chr8:67379259..67381817-chr8:67625879..67628203,2	MCF-7	breast:
4	chr8:67625194..67627994-chr8:67835989..67838898,3	MCF-7	breast:
5	chr8:67453447..67455816-chr8:67625265..67627410,2	MCF-7	breast:
6	chr8:67625428..67627452-chr8:67654330..67656798,2	MCF-7	breast:
7	chr8:67617194..67618857-chr8:67625197..67627686,2	MCF-7	breast:
8	chr8:67574105..67581178-chr8:67622567..67628099,10	MCF-7	breast:
9	chr8:67578457..67580462-chr8:67626751..67628464,2	MCF-7	breast:
10	chr8:67521707..67525650-chr8:67623825..67627698,8	MCF-7	breast:
11	chr8:67624145..67628067-chr8:67684003..67690579,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000213865	Chromatin interaction
ENSG00000245910	Chromatin interaction
ENSG00000104205	Chromatin interaction
ENSG00000270024	Chromatin interaction
ENSG00000185697	Chromatin interaction
ENSG00000175073	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10099769	1.00[AMR][1000 genomes]
rs55682741	1.00[AMR][1000 genomes]
rs55873903	1.00[AMR][1000 genomes]
rs60211635	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67625600-67627400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:67625600-67627400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:67625600-67640600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:67625600-67643600	Weak transcription	Gastric	stomach
5	chr8:67625800-67627200	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr8:67625800-67628800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:67625800-67650600	Weak transcription	Aorta	Aorta
8	chr8:67626200-67627200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr8:67626200-67627200	Enhancers	Psoas Muscle	Psoas
10	chr8:67626200-67628000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr8:67626200-67628400	Weak transcription	K562	blood
12	chr8:67626200-67651200	Weak transcription	Right Ventricle	heart
13	chr8:67626200-67657600	Weak transcription	Lung	lung
14	chr8:67626200-67664400	Weak transcription	Ovary	ovary
15	chr8:67626200-67665200	Weak transcription	Fetal Stomach	stomach
16	chr8:67626400-67627200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:67626400-67627200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr8:67626400-67627200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:67626400-67627200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:67626400-67627200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr8:67626400-67627200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr8:67626400-67627200	Enhancers	HSMM	muscle
23	chr8:67626400-67627200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr8:67626400-67627400	Enhancers	Primary B cells from cord blood	blood
25	chr8:67626400-67627400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr8:67626400-67628000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr8:67626400-67628000	Weak transcription	Brain Germinal Matrix	brain
28	chr8:67626400-67628200	Weak transcription	Dnd41	blood
29	chr8:67626400-67628400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr8:67626400-67628400	Weak transcription	Thymus	Thymus
31	chr8:67626400-67628600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr8:67626400-67628600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr8:67626400-67628600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:67626400-67628600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:67626400-67628600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr8:67626400-67628800	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr8:67626400-67628800	Enhancers	HMEC	breast
38	chr8:67626400-67633200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr8:67626400-67633400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr8:67626400-67633600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr8:67626400-67639800	Weak transcription	Right Atrium	heart
42	chr8:67626600-67627200	Enhancers	Adipose Nuclei	Adipose
43	chr8:67626600-67627200	Enhancers	Brain Angular Gyrus	brain
44	chr8:67626600-67627400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr8:67626600-67627400	Enhancers	Fetal Intestine Large	intestine
46	chr8:67626600-67627600	Enhancers	HepG2	liver
47	chr8:67626600-67628800	Enhancers	NHEK	skin
48	chr8:67626600-67643800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr8:67626800-67627200	Enhancers	Liver	Liver
50	chr8:67626800-67627400	Enhancers	Brain Substantia Nigra	brain

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