Variant report

Variant	rs58535000
Chromosome Location	chr13:50482288-50482289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1056543	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1326121	0.80[AFR][1000 genomes]
rs1853926	0.80[AFR][1000 genomes]
rs2066578	0.87[AFR][1000 genomes]
rs2066582	0.87[AFR][1000 genomes]
rs41284812	0.87[AFR][1000 genomes]
rs41284814	0.87[AFR][1000 genomes]
rs58584173	0.80[AFR][1000 genomes]
rs59019111	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs59881118	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61558258	0.84[EUR][1000 genomes]
rs61623782	0.80[AFR][1000 genomes]
rs73491507	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs74078710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74078712	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74078721	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs74078724	0.84[EUR][1000 genomes]
rs7986331	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7993496	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8001223	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50468600-50486000	Weak transcription	Liver	Liver
2	chr13:50476400-50497400	Weak transcription	Pancreas	Pancrea
3	chr13:50477800-50499600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:50478000-50487200	Weak transcription	Ovary	ovary
5	chr13:50478000-50495200	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:50478600-50491400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:50479200-50489600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr13:50479400-50490600	Weak transcription	Esophagus	oesophagus
9	chr13:50479600-50508600	Weak transcription	K562	blood
10	chr13:50479800-50500000	Weak transcription	Colon Smooth Muscle	Colon
11	chr13:50480800-50508800	Weak transcription	Fetal Brain Male	brain
12	chr13:50481200-50482800	Enhancers	Placenta	Placenta
13	chr13:50481400-50486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr13:50481400-50489600	Weak transcription	Fetal Intestine Large	intestine
15	chr13:50481800-50482600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:50481800-50509600	Weak transcription	Right Ventricle	heart
17	chr13:50482000-50482400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:50482000-50482400	Enhancers	HMEC	breast
19	chr13:50482000-50488000	Weak transcription	A549	lung
20	chr13:50482200-50482800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr13:50482200-50486000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:50482200-50486000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:50482200-50486200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:50482200-50486200	Weak transcription	Osteobl	bone
25	chr13:50482200-50488000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr13:50482200-50490400	Weak transcription	Fetal Muscle Leg	muscle

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