Variant report

Variant	rs58584173
Chromosome Location	chr13:50722638-50722639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50721524..50723036-chr13:50734197..50736584,2	MCF-7	breast:
2	chr13:50700096..50702357-chr13:50721574..50724200,2	K562	blood:
3	chr13:50696930..50699533-chr13:50721791..50723702,2	MCF-7	breast:
4	chr13:50701973..50704283-chr13:50721601..50723228,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1056543	0.93[AMR][1000 genomes]
rs1326121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1853926	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066560	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066569	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066570	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066577	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066578	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066580	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066582	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2066588	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41284812	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41284814	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56116235	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58535000	0.80[AFR][1000 genomes]
rs59019111	0.93[AMR][1000 genomes]
rs61623782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6561574	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7319019	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491507	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73491522	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73491532	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494012	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494027	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494029	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494031	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74076539	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74078710	0.88[AFR][1000 genomes]
rs74078712	0.88[AFR][1000 genomes]
rs74078721	0.80[AFR][1000 genomes]
rs7986331	0.91[AFR][1000 genomes]
rs7993496	0.88[AFR][1000 genomes]
rs7999257	0.81[AMR][1000 genomes]
rs8001223	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv1041501	chr13:50683189-50795195	Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50715600-50726400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr13:50716000-50723200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:50716000-50723600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:50716200-50723600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:50718400-50727800	Weak transcription	Stomach Mucosa	stomach
6	chr13:50718800-50723600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:50719000-50725600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:50719200-50723400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:50719200-50723600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:50719200-50723800	Weak transcription	Brain Germinal Matrix	brain
11	chr13:50719200-50724200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:50719200-50726000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr13:50719200-50726200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr13:50719400-50723400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr13:50719400-50723400	Weak transcription	NHDF-Ad	bronchial
16	chr13:50719400-50726400	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:50720000-50723200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr13:50721200-50726600	Weak transcription	HepG2	liver
19	chr13:50721400-50726000	Weak transcription	Osteobl	bone
20	chr13:50721800-50725400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:50722000-50723200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:50722000-50724200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr13:50722000-50724600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr13:50722200-50723000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr13:50722400-50723600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr13:50722400-50724600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr13:50722600-50723600	Weak transcription	H1 Cell Line	embryonic stem cell

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