Variant report

Variant	rs58547412
Chromosome Location	chr4:91760739-91760740
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11938241	1.00[AMR][1000 genomes]
rs55634325	1.00[AMR][1000 genomes]
rs55821522	1.00[AMR][1000 genomes]
rs56059278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59354577	1.00[AMR][1000 genomes]
rs61098294	1.00[AMR][1000 genomes]
rs6829855	1.00[AMR][1000 genomes]
rs73833900	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833901	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834563	1.00[AMR][1000 genomes]
rs73834564	1.00[AMR][1000 genomes]
rs73834565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836705	1.00[AMR][1000 genomes]
rs7689600	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv4422	chr4:91744177-91789188	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91746200-91761400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:91752400-91775000	Weak transcription	Pancreas	Pancrea
3	chr4:91754600-91771400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:91759000-91762000	Weak transcription	HUVEC	blood vessel
5	chr4:91759400-91761800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links